wokring on quantity variance

schema/catvrs/catvrs-source.yaml

@@ -174,63 +174,14 @@ $defs:
     required:
       - label
 
-  # QuantityChange:
-  #   maturity: draft
-  #   type: object
-  #   inherits: CategoricalVariation
-  #   description: >-
-  #     The Quantity Change class captures one axis of variation in the generalized model of categorical
-  #     variation.  It is used to model quantitative measure changes in a given biological level of
-  #     variation.
-  #   properties:
-  #     type:
-  #       type: string
-  #       const: QuantityChange
-  #       default: QuantityChange
-  #       description: 'MUST be "QuantityChange"'
-  #     label:
-  #       extends: label
-  #       description: >-
-  #         A primary label for the categorical variation. This required property should provide a 
-  #         short and descriptive textual representation of the concept.
-  #     description:
-  #       extends: description
-  #       description: >-
-  #         A textual description of the domain of variation that should match the categorical 
-  #         variation entity.
-  #     locationMatchCharacteristic:
-  #       type: string
-  #       enum: ['exact', 'partial', 'subinterval', 'superinterval']
-  #       description: >-
-  #         The characteristics of a valid match between a contextual CNV location (the query) and the 
-  #         Categorical CNV location (the domain), when both query and domain are represented on the same 
-  #         reference sequence. An `exact` match requires the location of the query and domain to be identical. 
-  #         A `subinterval` match requires the query to be a subinterval of the domain. A `superinterval` match
-  #         requires the query to be a superinterval of the domain. A `partial` match requires at least 1 residue
-  #         of overlap between the query and domain.
-  #     copyChange:
-  #       type: string
-  #       enum: [ "efo:0030069", "efo:0020073", "efo:0030068", "efo:0030067", "efo:0030064", "efo:0030070", "efo:0030071", "efo:0030072" ]
-  #       description: >-
-  #         A representation of the change in copies of a sequence in a system. MUST be one of "efo:0030069" (complete 
-  #         genomic loss), "efo:0020073" (high-level loss), "efo:0030068" (low-level loss), "efo:0030067" (loss), 
-  #         "efo:0030064" (regional base ploidy), "efo:0030070" (gain), "efo:0030071" (low-level gain), "efo:0030072" 
-  #         (high-level gain).
-  #     copies:
-  #       oneOf:
-  #         - type: integer
-  #         - $refCurie: vrs:Range
-  #       description: >-
-  #         The integral number of copies of the subject in a system.
-  #   required:
-  #     - label
 
   NumberCount:
     maturity: draft
     # ga4ghDigest:
     #   keys:
     #     - numberCount
     type: object
+    # inherits: QuantityVariance
     description: >-
       The absolute count of a discrete assayable unit (e.g. chromosome, gene, or sequence).
     properties:
@@ -245,7 +196,7 @@ $defs:
           - type: integer
           - $refCurie: vrs:Range
         description: >-
-          The integral quantity or wuantity range of the subject in a system
+          The integral quantity or quantity range of the subject in a system
     required: [ "count" ]
 
 
@@ -281,6 +232,56 @@ $defs:
           "efo:0030070" (gain), "efo:0030071" (low-level gain), "efo:0030072" (high-level gain).
         required: [ "change" ]
 
+  QuantityVariance:
+    maturity: draft
+    type: object
+    inherits: NumberCount
+    description: >-
+      The Quantity Variance class captures one axis of variation in the generalized model of categorical
+      variation.  It is used to model quantitative measure changes in a given biological level of
+      variation.
+    properties:
+      type:
+        type: string
+        const: QuantityVariance
+        default: QuantityVariance
+        description: 'MUST be "QuantityVariance"'
+      # label:
+  #       extends: label
+  #       description: >-
+  #         A primary label for the quantity variant. This required property should provide a 
+  #         short and descriptive textual representation of the concept.
+  #     description:
+  #       extends: description
+  #       description: >-
+  #         A textual description of the domain of variation that should match the categorical 
+  #         variation entity.
+  #     locationMatchCharacteristic:
+  #       type: string
+  #       enum: ['exact', 'partial', 'subinterval', 'superinterval']
+  #       description: >-
+  #         The characteristics of a valid match between a contextual CNV location (the query) and the 
+  #         Categorical CNV location (the domain), when both query and domain are represented on the same 
+  #         reference sequence. An `exact` match requires the location of the query and domain to be identical. 
+  #         A `subinterval` match requires the query to be a subinterval of the domain. A `superinterval` match
+  #         requires the query to be a superinterval of the domain. A `partial` match requires at least 1 residue
+  #         of overlap between the query and domain.
+  #     copyChange:
+  #       type: string
+  #       enum: [ "efo:0030069", "efo:0020073", "efo:0030068", "efo:0030067", "efo:0030064", "efo:0030070", "efo:0030071", "efo:0030072" ]
+  #       description: >-
+  #         A representation of the change in copies of a sequence in a system. MUST be one of "efo:0030069" (complete 
+  #         genomic loss), "efo:0020073" (high-level loss), "efo:0030068" (low-level loss), "efo:0030067" (loss), 
+  #         "efo:0030064" (regional base ploidy), "efo:0030070" (gain), "efo:0030071" (low-level gain), "efo:0030072" 
+  #         (high-level gain).
+  #     copies:
+  #       oneOf:
+  #         - type: integer
+  #         - $refCurie: vrs:Range
+  #       description: >-
+  #         The integral number of copies of the subject in a system.
+  #   required:
+  #     - label
 
 
   # # Categorical Variation is presented top-down. Everything rolls up to

schema/catvrs/def/NumberCount.rst

@@ -21,4 +21,4 @@ The absolute count of a discrete assayable unit (e.g. chromosome, gene, or seque
        *  - count
           - integer | `Range <../vrs/vrs.yaml#/$defs/Range>`_
           - 1..1
-          - The integral quantity or wuantity range of the subject in a system
+          - The integral quantity or quantity range of the subject in a system

schema/catvrs/def/QuantityVariance.rst

@@ -0,0 +1,20 @@
+**Computational Definition**
+
+The Quantity Variance class captures one axis of variation in the generalized model of categorical variation.  It is used to model quantitative measure changes in a given biological level of variation.
+
+    **Information Model**
+
+    .. list-table::
+       :class: clean-wrap
+       :header-rows: 1
+       :align: left
+       :widths: auto
+
+       *  - Field
+          - Type
+          - Limits
+          - Description
+       *  - type
+          - string
+          - 0..1
+          - MUST be "QuantityVariance"

schema/catvrs/json/NumberCount

@@ -21,7 +21,7 @@
                "type": "integer"
             }
          ],
-         "description": "The integral quantity or wuantity range of the subject in a system"
+         "description": "The integral quantity or quantity range of the subject in a system"
       }
    },
    "required": [

schema/catvrs/json/QuantityVariance

@@ -0,0 +1,18 @@
+{
+   "$schema": "https://json-schema.org/draft/2020-12/schema",
+   "$id": "https://w3id.org/ga4gh/schema/catvrs/1.x/json/QuantityVariance",
+   "title": "QuantityVariance",
+   "type": "object",
+   "maturity": "draft",
+   "description": "The Quantity Variance class captures one axis of variation in the generalized model of categorical variation.  It is used to model quantitative measure changes in a given biological level of variation.",
+   "properties": {
+      "type": {
+         "type": "string",
+         "const": "QuantityVariance",
+         "default": "QuantityVariance",
+         "description": "MUST be \"QuantityVariance\""
+      }
+   },
+   "required": [],
+   "additionalProperties": false
+}