prepare a 1.0.0-snapshot.2025-02 pre-release

ga4gh · Feb 11, 2025 · ff3f62b · ff3f62b
1 parent 11848ce
commit ff3f62b
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Showing 11 changed files with 29 additions and 35 deletions.
diff --git a/schema/cat-vrs/cat-vrs-source.yaml b/schema/cat-vrs/cat-vrs-source.yaml
@@ -1,5 +1,5 @@
 $schema: "https://json-schema.org/draft/2020-12/schema"
-$id: "https://w3id.org/ga4gh/schema/cat-vrs/1.x/cat-vrs-source.yaml"
+$id: "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/cat-vrs-source.yaml"
 title: GA4GH-Cat-VRS-Definitions
 type: object
 strict: true
@@ -9,8 +9,8 @@ imports:
   vrs: ../vrs/vrs-source.yaml
 
 namespaces:
-  gks.core: /ga4gh/schema/gks-core/1.0.0-snapshot.2025-02/json/
-  vrs: /ga4gh/schema/vrs/2.0.0-snapshot.2025-02/json/
+  gks.core: /ga4gh/schema/gks-core/1.0.0-snapshot.2025-02.2/json/
+  vrs: /ga4gh/schema/vrs/2.0.0-snapshot.2025-02.2/json/
 
 $defs:
 

diff --git a/schema/cat-vrs/json/CanonicalAllele b/schema/cat-vrs/json/CanonicalAllele
@@ -1,13 +1,13 @@
 {
    "$schema": "https://json-schema.org/draft/2020-12/schema",
-   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.x/json/CanonicalAllele",
+   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CanonicalAllele",
    "title": "CanonicalAllele",
    "type": "object",
    "maturity": "trial use",
    "description": "A canonical allele is defined by an Allele that is representative of a collection of congruent Alleles, each of which depict the same nucleic acid different underlying reference sequences. Congruent representations of an Allele often exist across different genome assemblies and associated cDNA transcript representations.",
    "allOf": [
       {
-         "$ref": "/ga4gh/schema/cat-vrs/1.x/json/CategoricalVariant"
+         "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CategoricalVariant"
       },
       {
          "properties": {
@@ -17,7 +17,7 @@
                "contains": {
                   "allOf": [
                      {
-                        "$ref": "/ga4gh/schema/cat-vrs/1.x/json/DefiningAlleleConstraint"
+                        "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/DefiningAlleleConstraint"
                      },
                      {
                         "type": "object",

diff --git a/schema/cat-vrs/json/CategoricalCnv b/schema/cat-vrs/json/CategoricalCnv
@@ -1,13 +1,13 @@
 {
    "$schema": "https://json-schema.org/draft/2020-12/schema",
-   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.x/json/CategoricalCnv",
+   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CategoricalCnv",
    "title": "CategoricalCnv",
    "type": "object",
    "maturity": "draft",
    "description": "A representation of the constraints for matching knowledge about CNVs.",
    "allOf": [
       {
-         "$ref": "/ga4gh/schema/cat-vrs/1.x/json/CategoricalVariant"
+         "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CategoricalVariant"
       },
       {
          "properties": {
@@ -20,7 +20,7 @@
                      "contains": {
                         "allOf": [
                            {
-                              "$ref": "/ga4gh/schema/cat-vrs/1.x/json/DefiningLocationConstraint"
+                              "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/DefiningLocationConstraint"
                            },
                            {
                               "properties": {
@@ -42,10 +42,10 @@
                      "contains": {
                         "oneOf": [
                            {
-                              "$ref": "/ga4gh/schema/cat-vrs/1.x/json/CopyCountConstraint"
+                              "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CopyCountConstraint"
                            },
                            {
-                              "$ref": "/ga4gh/schema/cat-vrs/1.x/json/CopyChangeConstraint"
+                              "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CopyChangeConstraint"
                            }
                         ]
                      }

diff --git a/schema/cat-vrs/json/CategoricalVariant b/schema/cat-vrs/json/CategoricalVariant
@@ -1,6 +1,6 @@
 {
    "$schema": "https://json-schema.org/draft/2020-12/schema",
-   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.x/json/CategoricalVariant",
+   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CategoricalVariant",
    "title": "CategoricalVariant",
    "type": "object",
    "maturity": "trial use",
@@ -64,16 +64,16 @@
          "items": {
             "oneOf": [
                {
-                  "$ref": "/ga4gh/schema/cat-vrs/1.x/json/CopyChangeConstraint"
+                  "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CopyChangeConstraint"
                },
                {
-                  "$ref": "/ga4gh/schema/cat-vrs/1.x/json/CopyCountConstraint"
+                  "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CopyCountConstraint"
                },
                {
-                  "$ref": "/ga4gh/schema/cat-vrs/1.x/json/DefiningAlleleConstraint"
+                  "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/DefiningAlleleConstraint"
                },
                {
-                  "$ref": "/ga4gh/schema/cat-vrs/1.x/json/DefiningLocationConstraint"
+                  "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/DefiningLocationConstraint"
                }
             ]
          }

diff --git a/schema/cat-vrs/json/Constraint b/schema/cat-vrs/json/Constraint
@@ -1,22 +1,22 @@
 {
    "$schema": "https://json-schema.org/draft/2020-12/schema",
-   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.x/json/Constraint",
+   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/Constraint",
    "title": "Constraint",
    "type": "object",
    "maturity": "trial use",
    "description": "Constraints are used to construct an intensional semantics of categorical variant types.",
    "oneOf": [
       {
-         "$ref": "/ga4gh/schema/cat-vrs/1.x/json/CopyChangeConstraint"
+         "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CopyChangeConstraint"
       },
       {
-         "$ref": "/ga4gh/schema/cat-vrs/1.x/json/CopyCountConstraint"
+         "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CopyCountConstraint"
       },
       {
-         "$ref": "/ga4gh/schema/cat-vrs/1.x/json/DefiningAlleleConstraint"
+         "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/DefiningAlleleConstraint"
       },
       {
-         "$ref": "/ga4gh/schema/cat-vrs/1.x/json/DefiningLocationConstraint"
+         "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/DefiningLocationConstraint"
       }
    ]
 }
diff --git a/schema/cat-vrs/json/CopyChangeConstraint b/schema/cat-vrs/json/CopyChangeConstraint
@@ -1,6 +1,6 @@
 {
    "$schema": "https://json-schema.org/draft/2020-12/schema",
-   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.x/json/CopyChangeConstraint",
+   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CopyChangeConstraint",
    "title": "CopyChangeConstraint",
    "type": "object",
    "maturity": "draft",

diff --git a/schema/cat-vrs/json/CopyCountConstraint b/schema/cat-vrs/json/CopyCountConstraint
@@ -1,6 +1,6 @@
 {
    "$schema": "https://json-schema.org/draft/2020-12/schema",
-   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.x/json/CopyCountConstraint",
+   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CopyCountConstraint",
    "title": "CopyCountConstraint",
    "type": "object",
    "maturity": "trial use",

diff --git a/schema/cat-vrs/json/DefiningAlleleConstraint b/schema/cat-vrs/json/DefiningAlleleConstraint
@@ -1,6 +1,6 @@
 {
    "$schema": "https://json-schema.org/draft/2020-12/schema",
-   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.x/json/DefiningAlleleConstraint",
+   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/DefiningAlleleConstraint",
    "title": "DefiningAlleleConstraint",
    "type": "object",
    "maturity": "trial use",

diff --git a/schema/cat-vrs/json/DefiningLocationConstraint b/schema/cat-vrs/json/DefiningLocationConstraint
@@ -1,6 +1,6 @@
 {
    "$schema": "https://json-schema.org/draft/2020-12/schema",
-   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.x/json/DefiningLocationConstraint",
+   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/DefiningLocationConstraint",
    "title": "DefiningLocationConstraint",
    "type": "object",
    "maturity": "trial use",

diff --git a/schema/cat-vrs/json/ProteinSequenceConsequence b/schema/cat-vrs/json/ProteinSequenceConsequence
@@ -1,21 +1,21 @@
 {
    "$schema": "https://json-schema.org/draft/2020-12/schema",
-   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.x/json/ProteinSequenceConsequence",
+   "$id": "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/ProteinSequenceConsequence",
    "title": "ProteinSequenceConsequence",
    "type": "object",
    "maturity": "trial use",
    "description": "A change that occurs in a protein sequence as a result of genomic changes. Due to the degenerate nature of the genetic code, there are often several genomic changes that can cause a protein sequence consequence. The protein sequence consequence, like a CanonicalAllele, is defined by an Allele that is representative of a collection of congruent Protein Alleles that share the same altered codon(s).",
    "allOf": [
       {
-         "$ref": "/ga4gh/schema/cat-vrs/1.x/json/CategoricalVariant"
+         "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/CategoricalVariant"
       },
       {
          "properties": {
             "constraints": {
                "contains": {
                   "allOf": [
                      {
-                        "$ref": "/ga4gh/schema/cat-vrs/1.x/json/DefiningAlleleConstraint"
+                        "$ref": "/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/json/DefiningAlleleConstraint"
                      },
                      {
                         "type": "object",

diff --git a/schema/cat-vrs/recipes-source.yaml b/schema/cat-vrs/recipes-source.yaml
@@ -1,17 +1,11 @@
 $schema: "https://json-schema.org/draft/2020-12/schema"
-$id: "https://w3id.org/ga4gh/schema/cat-vrs/1.x/recipes-source.yaml"
+$id: "https://w3id.org/ga4gh/schema/cat-vrs/1.0.0-snapshot.2025-02.1/recipes-source.yaml"
 title: GA4GH-Cat-VRS-Recipe-Definitions
 type: object
 
 imports:
-  gks.core: ../gks-core/gks-core-source.yaml
-  vrs: ../vrs/vrs-source.yaml
   cat-vrs: ./cat-vrs-source.yaml
 
-namespaces:
-  gks.core: /ga4gh/schema/gks-core/1.0.0-snapshot.2025-02/json/
-  vrs: /ga4gh/schema/vrs/2.0.0-snapshot.2025-02/json/
-
 $defs:
   ProteinSequenceConsequence:
     maturity: trial use