flag EXTRA_PARAMS_FLYE

gbouras13 · Oct 18, 2024 · 3580a4d · 3580a4d
1 parent b664c78
commit 3580a4d
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/hybracter/workflow/hybrid.smk b/hybracter/workflow/hybrid.smk
@@ -75,7 +75,7 @@ EXTRA_PARAMS_FLYE = config.args.extra_params_flye
 ADD_TO_FLYE =  False
 
 # Only if user specifies - otherwise None
-if extra_params_flye:
+if EXTRA_PARAMS_FLYE:
     ADD_TO_FLYE =  True
     print(f"As you have used --extra_params_flye the extra parameters {EXTRA_PARAMS_FLYE} will be used with Flye.")
 

diff --git a/hybracter/workflow/long.smk b/hybracter/workflow/long.smk
@@ -73,7 +73,7 @@ EXTRA_PARAMS_FLYE = config.args.extra_params_flye
 ADD_TO_FLYE =  False
 
 # Only if user specifies - otherwise None
-if extra_params_flye:
+if EXTRA_PARAMS_FLYE:
     ADD_TO_FLYE =  True
     print(f"The extra parameters {EXTRA_PARAMS_FLYE} will be used with Flye ")
 

diff --git a/hybracter/workflow/test_hybrid.smk b/hybracter/workflow/test_hybrid.smk
@@ -72,7 +72,7 @@ EXTRA_PARAMS_FLYE = config.args.extra_params_flye
 ADD_TO_FLYE =  False
 
 # Only if user specifies - otherwise None
-if extra_params_flye:
+if EXTRA_PARAMS_FLYE:
     ADD_TO_FLYE =  True
     print(f"The extra parameters {EXTRA_PARAMS_FLYE} will be used with Flye ")
 

diff --git a/hybracter/workflow/test_long.smk b/hybracter/workflow/test_long.smk
@@ -72,7 +72,7 @@ EXTRA_PARAMS_FLYE = config.args.extra_params_flye
 ADD_TO_FLYE =  False
 
 # Only if user specifies - otherwise None
-if extra_params_flye:
+if EXTRA_PARAMS_FLYE:
     ADD_TO_FLYE =  True
     print(f"The extra parameters {EXTRA_PARAMS_FLYE} will be used with Flye ")