removed all mentions of Boltz

ginkgobioworks · Jan 21, 2025 · fd92af1 · fd92af1
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diff --git a/CHANGES.md b/CHANGES.md
@@ -9,6 +9,10 @@ and `Semantic versioning 2.0.0 <http://semver.org/>`\_, with the exceptions that
 - versions above `1.0.0` will be numbered as `major.minor.patch`, as is
   typical
 
+# Unreleased
+
+- Removed Boltz requests
+
 # 0.7.0 (2025-01-14)
 
 Add new query type `RNADiffusionMaskedQuery`

diff --git a/README.md b/README.md
@@ -91,7 +91,6 @@ See the [example folder](examples/) and [reference docs](https://ginkgobioworks.
 | AA0         | Ginkgo's protein language model        | [Announcement](https://www.ginkgobioworks.com/2024/09/17/aa-0-protein-llm-technical-review/) | Embeddings, masked inference      | 650M     |
 | 3UTR        | Ginkgo's 3'UTR language model          | [Preprint](https://www.biorxiv.org/content/10.1101/2024.10.07.616676v1)                      | Embeddings, masked inference      | v1       |
 | Promoter-0  | Ginkgo's promoter activity model       | Coming soon                                                                                  | Promoter activity accross tissues | v1       |
-| Boltz       | Protein structure prediction model     | [Github](https://github.com/jwohlwend/boltz)                                                 | Protein structure prediction      | v1       |
 | ABdiffusion | Antibody diffusion model               | Coming soon                                                                                  | Unmasking                         | v1       |
 | LCDNA       | Long-context DNA diffusion model       | Coming soon                                                                                  | Unmasking                         | v1       |
 

diff --git a/docs/source/examples.rst b/docs/source/examples.rst
@@ -46,19 +46,3 @@ Promoter activity with Promoter-0
 .. literalinclude:: ../../examples/promoter_activity.py
    :language: python
    :linenos:
-
-
-Boltz structure inference
-~~~~~~~~~~~~~~~~~~~~~~~~~
-
-Structure inference with a simple (single-chain) protein sequence:
-
-.. literalinclude:: ../../examples/boltz_structure_inference/gfp.py
-   :language: python
-   :linenos:
-
-Structure inference with a multimer protein sequence and ligand(s):
-
-.. literalinclude:: ../../examples/boltz_structure_inference/with_ligand.py
-   :language: python
-   :linenos:
diff --git a/docs/source/ref.rst b/docs/source/ref.rst
@@ -48,11 +48,3 @@ Used to linear mRNA sequences using Ginkgo-devloped diffusion models mRNA.
 
 .. autoclass:: ginkgo_ai_client.queries.RNADiffusionMaskedQuery
 .. autoclass:: ginkgo_ai_client.queries.MultimodalDiffusionMaskedResponse
-
-Boltz structure inference queries
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-Used to predict the 3D structure of a protein sequence using Boltz.
-
-.. autoclass:: ginkgo_ai_client.queries.BoltzStructurePredictionQuery
-.. autoclass:: ginkgo_ai_client.queries.BoltzStructurePredictionResponse
diff --git a/examples/boltz_structure_inference/gfp.py b/examples/boltz_structure_inference/gfp.py