finalize slides for ❄️ 2024 and update lockfile

gladstone-institutes · Jan 19, 2024 · 8606433 · 8606433
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diff --git a/docs/Intro_to_R_data_analysis_part_1.html b/docs/Intro_to_R_data_analysis_part_1.html
@@ -2574,8 +2574,9 @@ <h2></h2>
 <section id="introductions" class="slide level2">
 <h2>Introductions</h2>
 <p><strong>Natalie Elphick</strong><br />
-Bioinformatician I<br />
-<em>Bioinformatics Core</em></p>
+Bioinformatician I</p>
+<p><strong>Michela Traglia (TA)</strong><br />
+Senior Statistician</p>
 </section>
 <section id="poll-1" class="slide level2">
 <h2>Poll 1</h2>
@@ -2590,6 +2591,13 @@ <h2>Poll 1</h2>
 <li>None of the above</li>
 </ol>
 </section>
+<section id="target-audience" class="slide level2">
+<h2>Target Audience</h2>
+<ul>
+<li>No background in statistics or computing</li>
+<li>No prior experience with programming or R/RStudio</li>
+</ul>
+</section>
 <section id="part-1" class="slide level2">
 <h2>Part 1:</h2>
 <ol type="1">
@@ -2819,7 +2827,7 @@ <h2>Exercise 2: Data Types and Structures</h2>
 <section id="min-break" class="title-slide slide level1">
 <h1>10 min break</h1>
 <center>
-<div class="countdown" id="timer_cfe51d43" data-update-every="1" tabindex="0" style="right:0;bottom:0;margin:5%;padding:50px;font-size:5em;position: relative; width: min-content;">
+<div class="countdown" id="timer_65f4df24" data-update-every="1" tabindex="0" style="right:0;bottom:0;margin:5%;padding:50px;font-size:5em;position: relative; width: min-content;">
 <div class="countdown-controls"><button class="countdown-bump-down">−</button><button class="countdown-bump-up">+</button></div>
 <code class="countdown-time"><span class="countdown-digits minutes">10</span><span class="countdown-digits colon">:</span><span class="countdown-digits seconds">00</span></code>
 </div>

diff --git a/docs/Intro_to_R_data_analysis_part_2.html b/docs/Intro_to_R_data_analysis_part_2.html
@@ -2795,6 +2795,14 @@ <h2></h2>
 <em>Press the ? key for tips on navigating these slides</em>
 </center>
 </section>
+<section id="introductions" class="title-slide slide level1">
+<h1>Introductions</h1>
+<p><strong>Natalie Elphick</strong><br />
+Bioinformatician I</p>
+<p><strong>Yihang Xin (TA)</strong><br />
+Software Engineer III</p>
+</section>
+
 <section id="schedule" class="title-slide slide level1">
 <h1>Schedule</h1>
 <ol type="1">
@@ -3635,7 +3643,7 @@ <h2>Arrange Rows</h2>
 <section id="summarising-data" class="slide level2">
 <h2>Summarising data</h2>
 <ul>
-<li>The dplyr <strong>summarize()</strong>function computes a table of
+<li>The dplyr <strong>summarise()</strong> function computes a table of
 summaries for a data frame</li>
 <li><strong>group_by()</strong> groups the input data frame by the
 specified variable(s)</li>
@@ -3854,7 +3862,7 @@ <h2>Adding and Modifying Layers</h2>
 <section id="min-break" class="title-slide slide level1">
 <h1>10 min break</h1>
 <center>
-<div class="countdown" id="timer_5d126f0c" data-update-every="1" tabindex="0" style="right:0;bottom:0;margin:5%;padding:50px;font-size:5em;position: relative; width: min-content;">
+<div class="countdown" id="timer_9ee5e107" data-update-every="1" tabindex="0" style="right:0;bottom:0;margin:5%;padding:50px;font-size:5em;position: relative; width: min-content;">
 <div class="countdown-controls"><button class="countdown-bump-down">−</button><button class="countdown-bump-up">+</button></div>
 <code class="countdown-time"><span class="countdown-digits minutes">10</span><span class="countdown-digits colon">:</span><span class="countdown-digits seconds">00</span></code>
 </div>

diff --git a/intro-r-data-analysis/Intro_to_R_data_analysis_part_1.Rmd b/intro-r-data-analysis/Intro_to_R_data_analysis_part_1.Rmd
@@ -26,7 +26,10 @@ library(tidyverse)
 
 **Natalie Elphick**    
 Bioinformatician I   
-*Bioinformatics Core*
+
+**Michela Traglia (TA)**     
+Senior Statistician    
+
 
 ## Poll 1
 
@@ -38,6 +41,10 @@ Bioinformatician I
 4.  All of the above
 5.  None of the above
 
+## Target Audience
+-   No background in statistics or computing
+-   No prior experience with programming or R/RStudio
+
 ## Part 1:
 
 1.  What is R and why should you use it?

diff --git a/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd b/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd
@@ -25,6 +25,13 @@ theme_set(theme_grey(base_size = 16))
 
 <center>*Press the ? key for tips on navigating these slides*</center>
 
+# Introductions
+**Natalie Elphick**    
+Bioinformatician I  
+
+**Yihang Xin (TA)**     
+Software Engineer III   
+
 # Schedule
 
 1. Introduction to Tidyverse
@@ -121,7 +128,7 @@ arrange(.data = mpg,
   scroll_box(width = "100%")
 ```
 ## Summarising data
--    The dplyr **summarize()**function computes a table of
+-    The dplyr **summarise()** function computes a table of
 summaries for a data frame
 -    **group_by()** groups the input data frame by the specified
 variable(s)

diff --git a/intro-r-data-analysis/renv.lock b/intro-r-data-analysis/renv.lock
@@ -804,6 +804,34 @@
       ],
       "Hash": "266a20443ca13c65688b2116d5220f76"
     },
+    "kableExtra": {
+      "Package": "kableExtra",
+      "Version": "1.3.4",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "digest",
+        "glue",
+        "grDevices",
+        "graphics",
+        "htmltools",
+        "knitr",
+        "magrittr",
+        "rmarkdown",
+        "rstudioapi",
+        "rvest",
+        "scales",
+        "stats",
+        "stringr",
+        "svglite",
+        "tools",
+        "viridisLite",
+        "webshot",
+        "xml2"
+      ],
+      "Hash": "49b625e6aabe4c5f091f5850aba8ff78"
+    },
     "knitr": {
       "Package": "knitr",
       "Version": "1.45",
@@ -1492,6 +1520,18 @@
       ],
       "Hash": "671a4d384ae9d32fc47a14e98bfa3dc8"
     },
+    "svglite": {
+      "Package": "svglite",
+      "Version": "2.1.3",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "cpp11",
+        "systemfonts"
+      ],
+      "Hash": "124a41fdfa23e8691cb744c762f10516"
+    },
     "sys": {
       "Package": "sys",
       "Version": "3.4.2",
@@ -1722,6 +1762,19 @@
       ],
       "Hash": "390f9315bc0025be03012054103d227c"
     },
+    "webshot": {
+      "Package": "webshot",
+      "Version": "0.5.5",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "callr",
+        "jsonlite",
+        "magrittr"
+      ],
+      "Hash": "16858ee1aba97f902d24049d4a44ef16"
+    },
     "whisker": {
       "Package": "whisker",
       "Version": "0.4.1",
@@ -1742,22 +1795,6 @@
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       "Hash": "4b25e70111b7d644322e9513f403a272"
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-      "Package": "xaringanthemer",
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-      "Source": "Repository",
-      "Repository": "RSPM",
-      "Requirements": [
-        "R",
-        "colorspace",
-        "glue",
-        "methods",
-        "purrr",
-        "utils",
-        "whisker"
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-      "Hash": "65ea1016710fa4058b9d5d330f3f24f6"
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     "xfun": {
       "Package": "xfun",
       "Version": "0.41",