Add bamstats nf-test

tests/modules/bamStats/bamstats/main.nf.test

@@ -0,0 +1,57 @@
+nextflow_process {
+
+    name "Test Process bamStats"
+    script "modules/bamStats/bamstats/main.nf"
+    process "bamStats"
+
+    tag "module"
+
+    test("Should produce BAM stats (compressed annotation)") {
+
+        when {
+            params {
+                // define parameters here. Example:
+                // outdir = "tests/results"
+            }
+            process {
+                """
+                input[0] = file("${baseDir}/data/annotation.gtf.gz")
+                input[1] = Channel.from([
+                    [ "sample3", "test3", file("${baseDir}/data/sample3_m4_n10_toGenome.bam"), "bam", "GenomeAlignments", true]
+                ])
+                """
+            }
+        }
+
+        then {
+            assert process.success
+            assert snapshot(process.out).match()
+        }
+
+    }
+
+    test("Should produce BAM stats (uncompressed annotation)") {
+
+        when {
+            params {
+                // define parameters here. Example:
+                // outdir = "tests/results"
+            }
+            process {
+                """
+                input[0] = file("${baseDir}/data/annotation.gtf")
+                input[1] = Channel.from([
+                    [ "sample3", "test3", file("${baseDir}/data/sample3_m4_n10_toGenome.bam"), "bam", "GenomeAlignments", true]
+                ])
+                """
+            }
+        }
+
+        then {
+            assert process.success
+            assert snapshot(process.out).match()
+        }
+
+    }
+
+}

tests/modules/bamStats/bamstats/main.nf.test.snap

@@ -0,0 +1,44 @@
+{
+    "Should produce BAM stats (uncompressed annotation)": {
+        "content": [
+            {
+                "0": [
+                    [
+                        "sample3",
+                        "test3",
+                        "sample3_stats.json:md5,77c72bef6f1410e33c90dbc01697fffc",
+                        "json",
+                        "BamStats",
+                        true
+                    ]
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.1"
+        },
+        "timestamp": "2024-04-18T17:10:13.589448"
+    },
+    "Should produce BAM stats (compressed annotation)": {
+        "content": [
+            {
+                "0": [
+                    [
+                        "sample3",
+                        "test3",
+                        "sample3_stats.json:md5,77c72bef6f1410e33c90dbc01697fffc",
+                        "json",
+                        "BamStats",
+                        true
+                    ]
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.1"
+        },
+        "timestamp": "2024-04-18T17:10:05.978606"
+    }
+}