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R 1 Updated Mar 7, 2021

Git to hold complete scripts and files related to graduate research

Shell 1 1 Updated Jun 27, 2018

all amnh code

Perl 1 Updated Feb 1, 2016

😻 Convert any video file to an optimized animated GIF.

JavaScript 6,240 311 Updated Mar 18, 2019

Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project represents an interdisciplinary collaboration between Pitch I…

PHP 150 30 Updated Oct 27, 2021

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

JavaScript 59,814 11,227 Updated Dec 11, 2024

R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities

R 20 3 Updated Jul 14, 2020

SEAStAR is a package of tools supporting the construction of complete analysis pipelines for next-generation (Illumina®, SOLiD™) sequencing data generated from environmental samples.

C 13 2 Updated Feb 27, 2019

AXIOME - Automation, Extension, and Integration Of Microbial Ecology: Helper tools to make managing numerical ecology pipelines easier

Vala 13 3 Updated Jun 20, 2014

Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) for ecological or biomedical research. This algorithm uses t…

Perl 14 Updated Nov 20, 2018

Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

Python 39 22 Updated Jun 24, 2024

Themes for PressForward package

1 Updated Feb 21, 2013

PressForward is a free plugin that provides an editorial workflow for content aggregation and curation within the WordPress dashboard. It is designed for bloggers and editorial teams who wish to co…

PHP 120 22 Updated Feb 25, 2025

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

Python 286 264 Updated Dec 19, 2022

Phylogenetic and taxonomic analysis for genomes and metagenomes

Perl 82 18 Updated Feb 17, 2016
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