Automated report

hubmapconsortium · Jul 11, 2022 · 2f24067 · 2f24067
1 parent 1e4321d
commit 2f24067
Show file tree

Hide file tree

Showing 234 changed files with 35,460 additions and 12,158 deletions.
diff --git a/NOTES.md b/NOTES.md
@@ -6,8 +6,8 @@ Release Notes
 
 |Ontology|Version|
 | :---: | :---: |
-|UBERON|2022-05-17|
-|CL|2022-02-16|
+|UBERON|2022-06-30|
+|CL|2022-06-18|
 
 ### ASCT+b Tables
 

diff --git a/graphs/ccf_Blood_graph.pdf b/graphs/ccf_Blood_graph.pdf
diff --git a/graphs/ccf_Blood_vasculature_graph.pdf b/graphs/ccf_Blood_vasculature_graph.pdf
diff --git a/graphs/ccf_Blood_vasculature_graph.png b/graphs/ccf_Blood_vasculature_graph.png
diff --git a/graphs/ccf_Bone-Marrow_graph.pdf b/graphs/ccf_Bone-Marrow_graph.pdf
diff --git a/graphs/ccf_Brain_graph.pdf b/graphs/ccf_Brain_graph.pdf
diff --git a/graphs/ccf_Brain_graph.png b/graphs/ccf_Brain_graph.png
diff --git a/graphs/ccf_Eye_graph.pdf b/graphs/ccf_Eye_graph.pdf
diff --git a/graphs/ccf_Eye_graph.png b/graphs/ccf_Eye_graph.png
diff --git a/graphs/ccf_Fallopian_tube_graph.pdf b/graphs/ccf_Fallopian_tube_graph.pdf
diff --git a/graphs/ccf_Heart_graph.pdf b/graphs/ccf_Heart_graph.pdf
diff --git a/graphs/ccf_Heart_graph.png b/graphs/ccf_Heart_graph.png
diff --git a/graphs/ccf_Kidney_graph.pdf b/graphs/ccf_Kidney_graph.pdf
diff --git a/graphs/ccf_Kidney_graph.png b/graphs/ccf_Kidney_graph.png
diff --git a/graphs/ccf_Knee_graph.pdf b/graphs/ccf_Knee_graph.pdf
diff --git a/graphs/ccf_Knee_graph.png b/graphs/ccf_Knee_graph.png
diff --git a/graphs/ccf_Large_intestine_graph.pdf b/graphs/ccf_Large_intestine_graph.pdf
diff --git a/graphs/ccf_Large_intestine_graph.png b/graphs/ccf_Large_intestine_graph.png
diff --git a/graphs/ccf_Liver_graph.pdf b/graphs/ccf_Liver_graph.pdf
diff --git a/graphs/ccf_Lung_graph.pdf b/graphs/ccf_Lung_graph.pdf
diff --git a/graphs/ccf_Lymph_node_graph.pdf b/graphs/ccf_Lymph_node_graph.pdf
diff --git a/graphs/ccf_Lymph_node_graph.png b/graphs/ccf_Lymph_node_graph.png
diff --git a/graphs/ccf_Lymph_vasculature_graph.pdf b/graphs/ccf_Lymph_vasculature_graph.pdf
diff --git a/graphs/ccf_Ovary_graph.pdf b/graphs/ccf_Ovary_graph.pdf
diff --git a/graphs/ccf_Pancreas_graph.pdf b/graphs/ccf_Pancreas_graph.pdf
diff --git a/graphs/ccf_Peripheral_nervous_system_graph.pdf b/graphs/ccf_Peripheral_nervous_system_graph.pdf
diff --git a/graphs/ccf_Peripheral_nervous_system_graph.png b/graphs/ccf_Peripheral_nervous_system_graph.png
diff --git a/graphs/ccf_Placenta_graph.pdf b/graphs/ccf_Placenta_graph.pdf
diff --git a/graphs/ccf_Placenta_graph.png b/graphs/ccf_Placenta_graph.png
diff --git a/graphs/ccf_Prostate_graph.pdf b/graphs/ccf_Prostate_graph.pdf
diff --git a/graphs/ccf_Skin_graph.pdf b/graphs/ccf_Skin_graph.pdf
diff --git a/graphs/ccf_Skin_graph.png b/graphs/ccf_Skin_graph.png
diff --git a/graphs/ccf_Small_intestine_graph.pdf b/graphs/ccf_Small_intestine_graph.pdf
diff --git a/graphs/ccf_Spinal_Cord_graph.pdf b/graphs/ccf_Spinal_Cord_graph.pdf
diff --git a/graphs/ccf_Spleen_graph.pdf b/graphs/ccf_Spleen_graph.pdf
diff --git a/graphs/ccf_Spleen_graph.png b/graphs/ccf_Spleen_graph.png
diff --git a/graphs/ccf_Thymus_graph.pdf b/graphs/ccf_Thymus_graph.pdf
diff --git a/graphs/ccf_Ureter_graph.pdf b/graphs/ccf_Ureter_graph.pdf
diff --git a/graphs/ccf_Urinary_bladder_graph.pdf b/graphs/ccf_Urinary_bladder_graph.pdf
diff --git a/graphs/ccf_Uterus_graph.pdf b/graphs/ccf_Uterus_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Blood_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.png b/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.png b/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Brain_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Brain_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Brain_graph.png b/graphs/last_official_ASCTB_release/ccf_Brain_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Eye_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Eye_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Eye_graph.png b/graphs/last_official_ASCTB_release/ccf_Eye_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Heart_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Heart_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Kidney_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Kidney_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Kidney_graph.png b/graphs/last_official_ASCTB_release/ccf_Kidney_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Knee_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Knee_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.png b/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Liver_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Liver_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lung_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lung_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lung_graph.png b/graphs/last_official_ASCTB_release/ccf_Lung_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.png b/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Ovary_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Ovary_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Ovary_graph.png b/graphs/last_official_ASCTB_release/ccf_Ovary_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.png b/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.png b/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Prostate_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Prostate_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Skin_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Skin_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Skin_graph.png b/graphs/last_official_ASCTB_release/ccf_Skin_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Spleen_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Spleen_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Thymus_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Thymus_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Ureter_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Ureter_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Uterus_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Uterus_graph.pdf
diff --git a/logs/Eye_AS_CT_strict_log.tsv b/logs/Eye_AS_CT_strict_log.tsv
@@ -17,12 +17,11 @@ CL:0011004	lens fiber cell	lens fiber cell	UBERON:0000390	lens nucleus	lens nucl
 CL:0011004	lens fiber cell	lens fiber cell	UBERON:0000389	lens cortex	lens cortex
 CL:0000129	microglial cell	microglial cell	UBERON:0000966	retina	retina
 CL:0011107	obsolete Muller cell	Muller cell	UBERON:0001791	inner nuclear layer of retina	inner nuclear layer of retina
-CL:0000669	pericyte cell	pericyte cell	UBERON:0004864	vasculature of retina	retinal vasculature
+CL:0000669	Pericyte	pericyte cell	UBERON:0004864	vasculature of retina	retinal vasculature
 CL:0000604	retinal rod cell	retinal rod cell	UBERON:0001789	outer nuclear layer of retina	outer nuclear layer of retina
 CL:0011004	lens fiber cell	lens fiber cell	UBERON:0002444	lens fiber	lens Fiber
 CL:0000132	corneal endothelial cell	corneal endothelial cell	UBERON:0001985	corneal endothelium	corneal endothelium
 CL:0002363	keratocyte	keratocyte	UBERON:0003952	anterior stroma of cornea	anterior stroma of cornea
-CL:0000575	corneal epithelial cell	corneal epithelial cell	UBERON:0001772	corneal epithelium	corneal epithelium
 CL:0002304	non-pigmented ciliary epithelial cell	non-pigmented ciliary epithelial cell	UBERON:0001778	ciliary epithelium	ciliary epithelium
 CL:0000066	epithelial cell	epithelial cell	UBERON:0002506	iris epithelium	iris epithelium
 CL:0002303	pigmented ciliary epithelial cell	pigmented ciliary epithelial cell	UBERON:0001778	ciliary epithelium	ciliary epithelium
diff --git a/logs/Kidney_AS_CT_strict_log.tsv b/logs/Kidney_AS_CT_strict_log.tsv
@@ -1,6 +1,9 @@
 s	slabel	user_slabel	o	olabel	user_olabel
-CL:0000653	glomerular visceral epithelial cell	glomerular visceral epithelial cell	UBERON:0006852	obsolete glomerular visceral epithelium	glomerular visceral epithelium
+CL:0000653	Podocyte	glomerular visceral epithelial cell	UBERON:0006852	obsolete glomerular visceral epithelium	glomerular visceral epithelium
 CL:1000718	kidney inner medulla collecting duct principal cell	kidney inner medulla collecting duct principal cell	UBERON:0009095	tip of renal papilla	tip of renal papilla
+CL:4030009	epithelial cell of proximal tubule segment 1	epithelial cell of proximal tubule segment 1	UBERON:0004196	proximal convoluted tubule segment 1	proximal convoluted tubule segment 1
+CL:4030010	epithelial cell of proximal tubule segment 2	epithelial cell of proximal tubule segment 2	UBERON:0004197	proximal convoluted tubule segment 2	proximal convoluted tubule segment 2
+CL:4030011	epithelial cell of proximal tubule segment 3	epithelial cell of proximal tubule segment 3	UBERON:0001290	proximal straight tubule	proximal straight tubule
 CL:0000115	Endothelial Cell	endothlial cell	UBERON:0001986	endothelium	endothelium
 CL:1001033	Peritubular Capillary Endothelial Cell	peritubular capillary endothelial cell	UBERON:0012441	endothelium of peritubular capillary	endothelium of peritubular capillary
 CL:0002138	endothelial cell of lymphatic vessel	endothelial cell of lymphatic vessel	UBERON:0002042	lymphatic vessel endothelium	lymphatic vessel endothelium

diff --git a/logs/Knee_AS_CT_strict_log.tsv b/logs/Knee_AS_CT_strict_log.tsv
@@ -7,7 +7,7 @@ CL:0000062	osteoblast	osteoblast	UBERON:0009980	condyle of femur	condyle of femu
 CL:0000779	multinuclear osteoclast	multinuclear osteoclast	UBERON:0009980	condyle of femur	condyle of femur
 CL:0000778	mononuclear osteoclast	mononuclear osteoclast	UBERON:0009980	condyle of femur	condyle of femur
 CL:2000008	microvascular endothelial cell	microvascular endothelial cell	UBERON:0007195	stroma of bone marrow	stroma of bone marrow
-CL:0000669	pericyte cell	pericyte cell	UBERON:0009980	condyle of femur	condyle of femur
+CL:0000669	pericyte	pericyte cell	UBERON:0009980	condyle of femur	condyle of femur
 CL:0007010	preosteoblast	preosteoblast	UBERON:0009980	condyle of femur	condyle of femur
 CL:0002262	endothelial cell of sinusoid	endothelial cell of sinusoid	UBERON:0009980	condyle of femur	condyle of femur
 CL:0000136	fat cell	fat cell	UBERON:0009980	condyle of femur	condyle of femur
diff --git a/logs/Large_intestine_AS_CT_strict_log.tsv b/logs/Large_intestine_AS_CT_strict_log.tsv
diff --git a/logs/Lymph_node_AS_CT_strict_log.tsv b/logs/Lymph_node_AS_CT_strict_log.tsv
@@ -3,14 +3,16 @@ CL:0000186	myofibroblast cell	myofibroblast cell	UBERON:0002194	capsule of lymph
 CL:0000071	Blood Vessel Endothelial Cell	blood vessel endothelial cell	UBERON:8410042	arteriole of lymph node	arteriole of lymph node
 CL:0000071	Blood Vessel Endothelial Cell	blood vessel endothelial cell	UBERON:8410041	venule of lymph node	venule of lymph node
 CL:0000186	myofibroblast cell	myofibroblast cell	UBERON:0002195	trabecula of lymph node	trabecula of lymph node
-CL:0000669	pericyte cell	pericyte cell	UBERON:8410041	venule of lymph node	venule of lymph node
+CL:0000669	Pericyte	pericyte cell	UBERON:8410041	venule of lymph node	venule of lymph node
 CL:0000887	lymph node subcapsular sinus macrophage	lymph node subcapsular sinus macrophage	UBERON:0005463	subcapsular sinus of lymph node	subcapsular sinus of lymph node
+CL:0009109	lymphatic endothelial cell of trabecula	lymphatic endothelial cell of trabecula	UBERON:8410032	trabecular sinus of lymph node	trabecular sinus of lymph node
 CL:0000442	Follicular Dendritic Cell	follicular dendritic cell	UBERON:0010395	lymph node primary follicle	lymph node primary follicle
 CL:0000788	Naive B Cell	naive B cell	UBERON:0010395	lymph node primary follicle	lymph node primary follicle
 CL:0000787	Memory B Cell	memory B cell	UBERON:0010395	lymph node primary follicle	lymph node primary follicle
 CL:0000235	Macrophage	macrophage	UBERON:0010395	lymph node primary follicle	lymph node primary follicle
 CL:0000442	Follicular Dendritic Cell	follicular dendritic cell	UBERON:8410052	lymph node germinal center light zone	lymph node germinal center light zone
 CL:0002038	T Follicular Helper Cell	T follicular helper cell	UBERON:8410052	lymph node germinal center light zone	lymph node germinal center light zone
+CL:0009113	T Follicular Regulatory Cell	T follicular regulatory cell	UBERON:8410052	lymph node germinal center light zone	lymph node germinal center light zone
 CL:0000888	lymph node tingible body macrophage	lymph node tingible body macrophage	UBERON:8410052	lymph node germinal center light zone	lymph node germinal center light zone
 CL:0000980	Plasmablast	plasmablast	UBERON:8410052	lymph node germinal center light zone	lymph node germinal center light zone
 CL:0000788	Naive B Cell	naive B cell	UBERON:0010420	lymph node germinal center mantle zone	lymph node germinal center mantle zone
@@ -25,9 +27,12 @@ CL:0000910	cytotoxic T cell	cytotoxic T cell	UBERON:8410067	lymph node interfoll
 CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	naive thymus-derived CD8-positive, alpha-beta T cell	UBERON:8410067	lymph node interfollicular cortex	lymph node interfollicular cortex
 CL:0000909	CD8-positive, alpha-beta memory T cell	CD8-positive, alpha-beta memory T cell	UBERON:8410067	lymph node interfollicular cortex	lymph node interfollicular cortex
 CL:0000623	Natural Killer Cell	natural killer cell	UBERON:8410067	lymph node interfollicular cortex	lymph node interfollicular cortex
+CL:0009105	T Cell Zone Reticular Cell	T cell zone reticular cell	UBERON:8410067	lymph node interfollicular cortex	lymph node interfollicular cortex
 CL:0000451	Dendritic Cell	dendritic cell	UBERON:8410067	lymph node interfollicular cortex	lymph node interfollicular cortex
+CL:0009113	T Follicular Regulatory Cell	T follicular regulatory cell	UBERON:8410067	lymph node interfollicular cortex	lymph node interfollicular cortex
 CL:0002399	CD1c-positive myeloid dendritic cell	CD1c-positive myeloid dendritic cell	UBERON:8410067	lymph node interfollicular cortex	lymph node interfollicular cortex
 CL:0002138	Lymphatic Endothelial Cell	endothelial cell of lymphatic vessel	UBERON:8410074	lymph node paracortical sinus	lymph node paracortical sinus
+CL:0009105	T Cell Zone Reticular Cell	T cell zone reticular cell	UBERON:8410074	lymph node paracortical sinus	lymph node paracortical sinus
 CL:0000235	Macrophage	macrophage	UBERON:8410074	lymph node paracortical sinus	lymph node paracortical sinus
 CL:0000071	Blood Vessel Endothelial Cell	blood vessel endothelial cell	UBERON:8410066	lymph node paracortex	lymph node paracortex
 CL:0000071	Blood Vessel Endothelial Cell	blood vessel endothelial cell	UBERON:8410038	high endothelial venule of lymph node	high endothelial venule of lymph node
@@ -47,8 +52,10 @@ CL:0000909	CD8-positive, alpha-beta memory T cell	CD8-positive, alpha-beta memor
 CL:0000623	Natural Killer Cell	natural killer cell	UBERON:8410075	lymph node paracortical cord	lymph node paracortical cord
 CL:0000097	Mast Cell	mast cell	UBERON:8410075	lymph node paracortical cord	lymph node paracortical cord
 CL:0000786	Plasma Cell	plasma cell	UBERON:8410075	lymph node paracortical cord	lymph node paracortical cord
+CL:0009114	Monocytoid B Cell	monocytoid B Cell	UBERON:8410075	lymph node paracortical cord	lymph node paracortical cord
 CL:0000236	B Cell	B cell	UBERON:8410075	lymph node paracortical cord	lymph node paracortical cord
 CL:0000235	Macrophage	macrophage	UBERON:0009744	lymph node medullary sinus	lymph node medullary sinus
+CL:0009106	Medullary Reticular Cell	medullary reticular cell	UBERON:0009745	lymph node medullary cord	lymph node medullary cord
 CL:0000084	T Cell	T Cell	UBERON:0009745	lymph node medullary cord	lymph node medullary cord
 CL:0002138	Lymphatic Endothelial Cell	endothelial cell of lymphatic vessel	UBERON:0009744	lymph node medullary sinus	lymph node medullary sinus
 CL:0000786	Plasma Cell	plasma cell	UBERON:0009745	lymph node medullary cord	lymph node medullary cord
@@ -59,7 +66,8 @@ CL:0000980	Plasmablast	plasmablast	UBERON:0009745	lymph node medullary cord	lymp
 CL:0000451	Dendritic Cell	dendritic cell	UBERON:0009745	lymph node medullary cord	lymph node medullary cord
 CL:0000071	Blood Vessel Endothelial Cell	blood vessel endothelial cell	UBERON:8410035	medullary arteriole of lymph node	medullary arteriole of lymph node
 CL:0000071	Blood Vessel Endothelial Cell	blood vessel endothelial cell	UBERON:8410036	medullary venule of lymph node	medullary venule of lymph node
-CL:0000669	pericyte cell	pericyte cell	UBERON:0002007	medulla of lymph node	medulla of lymph node
+CL:0000669	Pericyte	pericyte cell	UBERON:0002007	medulla of lymph node	medulla of lymph node
+CL:0009110	Lymphatic Endothelial Cell of Medulla Ceiling	lymphatic endothelial cell of medulla ceiling	UBERON:0005463	subcapsular sinus of lymph node	subcapsular sinus of lymph node
 CL:0002138	Lymphatic Endothelial Cell	endothelial cell of lymphatic vessel	UBERON:0010397	efferent lymphatic vessel	efferent lymphatic vessel
 CL:0019017	lymphatic vessel smooth muscle cell	lymphatic vessel smooth muscle cell	UBERON:0010397	efferent lymphatic vessel	efferent lymphatic vessel
 CL:0011103	Sympathetic Neuron	sympathetic neuron	UBERON:0034729	Sympathetic nerve	sympathetic nerve

diff --git a/logs/Peripheral_nervous_system_AS_has_part_CT_log.tsv b/logs/Peripheral_nervous_system_AS_has_part_CT_log.tsv
@@ -1,6 +1,4 @@
 s	slabel	user_slabel	o	olabel	user_olabel
-CL:0000540	neuron	neuron	UBERON:0001021	nerve	nerve
-CL:0000540	neuron	neuron	UBERON:0001780	spinal nerve	spinal nerve
 CL:0000540	neuron	neuron	UBERON:0003725	cervical nerve plexus	cervical nerve plexus
 CL:0000540	neuron	neuron	UBERON:0001814	brachial nerve plexus	brachial nerve plexus
 CL:0000540	neuron	neuron	UBERON:0034987	lumbar nerve plexus	lumbar nerve plexus

diff --git a/logs/Placenta_AS_CT_strict_log.tsv b/logs/Placenta_AS_CT_strict_log.tsv
@@ -1,9 +1,9 @@
 s	slabel	user_slabel	o	olabel	user_olabel
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002066	umbilical vein	umbilical vein
-CL:0000669	pericyte cell	pericyte cell	UBERON:0002066	umbilical vein	umbilical vein
+CL:0000669	pericyte	pericyte cell	UBERON:0002066	umbilical vein	umbilical vein
 CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0002066	umbilical vein	umbilical vein
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0001310	umbilical artery	umbilical artery
-CL:0000669	pericyte cell	pericyte cell	UBERON:0001310	umbilical artery	umbilical artery
+CL:0000669	pericyte	pericyte cell	UBERON:0001310	umbilical artery	umbilical artery
 CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0001310	umbilical artery	umbilical artery
 CL:0002536	epithelial cell of amnion	epithelial cell of amnion	UBERON:0003254	amniotic ectoderm	amnion epithelium
 CL:0000523	mononuclear cytotrophoblast cell	cytotrophoblast	UBERON:0000088	trophoblast	trophoblast
@@ -18,10 +18,10 @@ CL:0000523	mononuclear cytotrophoblast cell	cytotrophoblast	UBERON:0000088	troph
 CL:0000525	syncytiotrophoblast cell	syncytiotrophoblast	UBERON:0000088	trophoblast	trophoblast
 CL:0008036	extravillous trophoblast	extravillous trophoblast	UBERON:0000088	trophoblast	trophoblast
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0004027	chorionic plate	chorionic plate
-CL:0000669	pericyte cell	pericyte cell	UBERON:0004027	chorionic plate	chorionic plate
+CL:0000669	pericyte	pericyte cell	UBERON:0004027	chorionic plate	chorionic plate
 CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0004027	chorionic plate	chorionic plate
 CL:3000001	Hofbauer cell	Hofbauer cell	UBERON:0007106	chorionic villus	chorionic villus
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0007106	chorionic villus	chorionic villus
-CL:0000669	pericyte cell	pericyte cell	UBERON:0007106	chorionic villus	chorionic villus
+CL:0000669	pericyte	pericyte cell	UBERON:0007106	chorionic villus	chorionic villus
 CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0007106	chorionic villus	chorionic villus
 CL:2000062	placental villus capillary endothelial cell	placental villous capillary endothelial cell	UBERON:0007106	chorionic villus	chorionic villus
diff --git a/logs/Skin_AS_CT_strict_log.tsv b/logs/Skin_AS_CT_strict_log.tsv
@@ -31,7 +31,7 @@ CL:0002573	Schwann cell	Schwann cell	UBERON:0002067	Dermis	dermis
 CL:0000115	Endothelial cell	endothelial cell	UBERON:0035549	vasculature of integument	vasculature of integument
 CL:0000359	vascular associated smooth muscle cell	smooth muscle cell	UBERON:0002067	Dermis	dermis
 CL:0002292	type I cell of carotid body	type I cell of carotid body	UBERON:0002067	Dermis	dermis
-CL:0000669	pericyte cell	pericyte cell	UBERON:0002067	Dermis	dermis
+CL:0000669	Pericyte	pericyte cell	UBERON:0002067	Dermis	dermis
 CL:0002138	endothelial cell of lymphatic vessel	endothelial cell of lymphatic vessel	UBERON:0002067	Dermis	dermis
 CL:0002138	endothelial cell of lymphatic vessel	endothelial cell of lymphatic vessel	UBERON:0002072	hypodermis	hypodermis
 CL:0002620	skin fibroblast	skin fibroblast	UBERON:0002072	hypodermis	hypodermis