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hubmapconsortium · Sep 15, 2023 · 7ea90dd · 7ea90dd
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diff --git a/NOTES.md b/NOTES.md
@@ -6,9 +6,9 @@ Release Notes
 
 |Ontology|Version|
 | :---: | :---: |
+|CL|2023-08-24|
 |PCL|2023-02-27|
-|UBERON|2023-07-25|
-|CL|2023-07-20|
+|UBERON|2023-09-05|
 
 ### ASCT+b Tables
 
@@ -20,10 +20,10 @@ Release Notes
 |Brain|v1.5|revise for October 1, 2023|
 |Eye|v1.4|revise for October 1, 2023|
 |Fallopian_tube|v1.2|revise for October 1, 2023|
-|Heart|v1.3|revise for April 1, 2023|
+|Heart|v1.3|revise for October 1, 2023|
 |Kidney|v1.4|revise for October 1, 2023|
 |Knee|v1.1|June 15, 2023|
-|Large_intestine|v1.4|revise for October, 2022|
+|Large_intestine|v1.4|revise for October, 2023|
 |Liver|v1.2|revise for April 1, 2023|
 |Lung|v1.4|revise for October 1|
 |Lymph_node|v1.3|revise for October 1, 2023|

diff --git a/docs/Anatomical_Systems/README.md b/docs/Anatomical_Systems/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2023-09-13)
+ASCT+B Validation Reports for Anatomical_Systems (2023-09-15)
 =============================================================
 
 Table of contents

diff --git a/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf b/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf
diff --git a/docs/Anatomical_Systems/graph.md b/docs/Anatomical_Systems/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2023-09-13)
+ASCT+B Validation Reports for Anatomical_Systems (2023-09-15)
 =============================================================
 
 # ASCT+B as Graph

diff --git a/docs/Blood/README.md b/docs/Blood/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2023-09-13)
+ASCT+B Validation Reports for Blood (2023-09-15)
 ================================================
 
 Table of contents
@@ -129,9 +129,9 @@ In the case of the CT-CT relationship, for each couple of terms, we verify for _
 
 |    | row_number                                                                                                               | s          | slabel                                                | user_slabel                       | o          | olabel                | user_olabel              |          deltaIC |
 |----|--------------------------------------------------------------------------------------------------------------------------|------------|-------------------------------------------------------|-----------------------------------|------------|-----------------------|--------------------------|------------------|
-|  3 | [36](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=36:36) | CL:0000824 | mature natural killer cell                            | mature Natural killer             | CL:0000814 | mature NK T cell      | NK lymphocytes           | 187148           |
-|  4 | [35](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=35:35) | CL:0000938 | CD16-negative, CD56-bright natural killer cell, human | CD56 bright Natural killer        | CL:0000814 | mature NK T cell      | NK lymphocytes           | 187048           |
-|  7 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | CL:0000840 | immature conventional dendritic cell                  | transitional Dendritic Cell (tDC) | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |      2.42464e-10 |
+|  3 | [36](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=36:36) | CL:0000824 | mature natural killer cell                            | mature Natural killer             | CL:0000814 | mature NK T cell      | NK lymphocytes           | 149433           |
+|  4 | [35](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=35:35) | CL:0000938 | CD16-negative, CD56-bright natural killer cell, human | CD56 bright Natural killer        | CL:0000814 | mature NK T cell      | NK lymphocytes           | 149333           |
+|  7 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | CL:0000840 | immature conventional dendritic cell                  | transitional Dendritic Cell (tDC) | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |      3.36871e-10 |
 | 12 | [16](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=16:16) | CL:0002394 | CD141-positive myeloid dendritic cell                 | dendritic cell type 1 (DC1)       | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |    nan           |
 | 14 | [17](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=17:17) | CL:0002399 | CD1c-positive myeloid dendritic cell                  | dendritic cell type 2 (DC2)       | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |    nan           |
 | 16 | [18](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=18:18) | CL:0002399 | CD1c-positive myeloid dendritic cell                  | dendritic cell type 3 (DC3)       | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |    nan           |
@@ -149,12 +149,12 @@ In the case of the AS-CT relationship, for each couple of terms, we verify for _
 
 |    | row_number                                                                                                               | s          | slabel                                                                     | user_slabel                       | o              | olabel   | user_olabel   |          deltaIC |
 |----|--------------------------------------------------------------------------------------------------------------------------|------------|----------------------------------------------------------------------------|-----------------------------------|----------------|----------|---------------|------------------|
-|  0 | [27](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=27:27) | CL:0000897 | CD4-positive, alpha-beta memory T cell                                     | CD4 T cell memory                 | UBERON:0000178 | Blood    | Blood         | 274247           |
-|  1 | [28](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=28:28) | CL:0000897 | CD4-positive, alpha-beta memory T cell                                     | CD4 T cell memory                 | UBERON:0000178 | Blood    | Blood         | 274247           |
-|  2 | [31](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=31:31) | CL:0000897 | CD4-positive, alpha-beta memory T cell                                     | CD4 T cell memory                 | UBERON:0000178 | Blood    | Blood         | 274247           |
-|  5 | [15](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=15:15) | CL:0000818 | transitional stage B cell                                                  | transitional B cell               | UBERON:0000178 | Blood    | Blood         |     91.5667      |
-|  6 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | CL:0000840 | immature conventional dendritic cell                                       | transitional Dendritic Cell (tDC) | UBERON:0000178 | Blood    | Blood         |      2.48254e-10 |
-|  8 | [33](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=33:33) | CL:0001062 | effector memory CD8-positive, alpha-beta T cell, terminally differentiated | CD8 T cell effector memory CD45RA | UBERON:0000178 | Blood    | Blood         |      5.78978e-12 |
+|  0 | [27](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=27:27) | CL:0000897 | CD4-positive, alpha-beta memory T cell                                     | CD4 T cell memory                 | UBERON:0000178 | Blood    | Blood         | 274980           |
+|  1 | [28](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=28:28) | CL:0000897 | CD4-positive, alpha-beta memory T cell                                     | CD4 T cell memory                 | UBERON:0000178 | Blood    | Blood         | 274980           |
+|  2 | [31](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=31:31) | CL:0000897 | CD4-positive, alpha-beta memory T cell                                     | CD4 T cell memory                 | UBERON:0000178 | Blood    | Blood         | 274980           |
+|  5 | [15](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=15:15) | CL:0000818 | transitional stage B cell                                                  | transitional B cell               | UBERON:0000178 | Blood    | Blood         |     75.6769      |
+|  6 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | CL:0000840 | immature conventional dendritic cell                                       | transitional Dendritic Cell (tDC) | UBERON:0000178 | Blood    | Blood         |      3.42575e-10 |
+|  8 | [33](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=33:33) | CL:0001062 | effector memory CD8-positive, alpha-beta T cell, terminally differentiated | CD8 T cell effector memory CD45RA | UBERON:0000178 | Blood    | Blood         |      5.70366e-12 |
 |  9 | [12](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=12:12) | CL:0000816 | immature B cell                                                            | immature B cell                   | UBERON:0000178 | Blood    | Blood         |    nan           |
 | 10 | [13](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=13:13) | CL:0000787 | memory B cell                                                              | memory B cell                     | UBERON:0000178 | Blood    | Blood         |    nan           |
 | 11 | [14](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=14:14) | CL:0000788 | naive B cell                                                               | naive B cell                      | UBERON:0000178 | Blood    | Blood         |    nan           |

diff --git a/docs/Blood/assets/ccf_Blood_graph.pdf b/docs/Blood/assets/ccf_Blood_graph.pdf
diff --git a/docs/Blood/class_Blood_log.tsv b/docs/Blood/class_Blood_log.tsv
@@ -1,13 +1,13 @@
 row_number	s	slabel	user_slabel	o	olabel	user_olabel	deltaIC
-27	CL:0000897	CD4-positive, alpha-beta memory T cell	CD4 T cell memory	UBERON:0000178	Blood	Blood	274247.469
-28	CL:0000897	CD4-positive, alpha-beta memory T cell	CD4 T cell memory	UBERON:0000178	Blood	Blood	274247.469
-31	CL:0000897	CD4-positive, alpha-beta memory T cell	CD4 T cell memory	UBERON:0000178	Blood	Blood	274247.469
-36	CL:0000824	mature natural killer cell	mature Natural killer	CL:0000814	mature NK T cell	NK lymphocytes	187148.078
-35	CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CD56 bright Natural killer	CL:0000814	mature NK T cell	NK lymphocytes	187048.078
-15	CL:0000818	transitional stage B cell	transitional B cell	UBERON:0000178	Blood	Blood	91.5667114
-20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	UBERON:0000178	Blood	Blood	2.48253917e-10
-20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	CL:0001056	dendritic cell, human	dendritic cell (DC)	2.4246413689e-10
-33	CL:0001062	effector memory CD8-positive, alpha-beta T cell, terminally differentiated	CD8 T cell effector memory CD45RA	UBERON:0000178	Blood	Blood	5.78978011e-12
+27	CL:0000897	CD4-positive, alpha-beta memory T cell	CD4 T cell memory	UBERON:0000178	Blood	Blood	274980.094
+28	CL:0000897	CD4-positive, alpha-beta memory T cell	CD4 T cell memory	UBERON:0000178	Blood	Blood	274980.094
+31	CL:0000897	CD4-positive, alpha-beta memory T cell	CD4 T cell memory	UBERON:0000178	Blood	Blood	274980.094
+36	CL:0000824	mature natural killer cell	mature Natural killer	CL:0000814	mature NK T cell	NK lymphocytes	149432.938
+35	CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CD56 bright Natural killer	CL:0000814	mature NK T cell	NK lymphocytes	149332.937992
+15	CL:0000818	transitional stage B cell	transitional B cell	UBERON:0000178	Blood	Blood	75.6768799
+20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	UBERON:0000178	Blood	Blood	3.42574968e-10
+20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	CL:0001056	dendritic cell, human	dendritic cell (DC)	3.3687130346000003e-10
+33	CL:0001062	effector memory CD8-positive, alpha-beta T cell, terminally differentiated	CD8 T cell effector memory CD45RA	UBERON:0000178	Blood	Blood	5.70366454e-12
 12	CL:0000816	immature B cell	immature B cell	UBERON:0000178	Blood	Blood	
 13	CL:0000787	memory B cell	memory B cell	UBERON:0000178	Blood	Blood	
 14	CL:0000788	naive B cell	naive B cell	UBERON:0000178	Blood	Blood	

diff --git a/docs/Blood/graph.md b/docs/Blood/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2023-09-13)
+ASCT+B Validation Reports for Blood (2023-09-15)
 ================================================
 
 # ASCT+B as Graph