Skip to content

Commit

Permalink
Automated report
Browse files Browse the repository at this point in the history
  • Loading branch information
anitacaron committed Sep 20, 2022
1 parent 5d29ef1 commit 99c686b
Show file tree
Hide file tree
Showing 156 changed files with 20,616 additions and 8,069 deletions.
4 changes: 2 additions & 2 deletions NOTES.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,8 +6,8 @@ Release Notes

|Ontology|Version|
| :---: | :---: |
|CL|2022-06-18|
|UBERON|2022-06-30|
|UBERON|2022-08-19|
|CL|2022-08-16|

### ASCT+b Tables

Expand Down
Binary file modified graphs/ccf_Blood_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Blood_vasculature_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Bone-Marrow_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Brain_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Eye_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Fallopian_tube_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Heart_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Heart_graph.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified graphs/ccf_Kidney_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Kidney_graph.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified graphs/ccf_Knee_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Large_intestine_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Liver_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Lung_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Lymph_node_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Lymph_vasculature_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Ovary_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Pancreas_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Peripheral_nervous_system_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Placenta_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Prostate_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Skin_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Small_intestine_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Spinal_Cord_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Spleen_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Thymus_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Ureter_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Urinary_bladder_graph.pdf
Binary file not shown.
Binary file modified graphs/ccf_Uterus_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Blood_graph.pdf
Binary file not shown.
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Brain_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Eye_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Heart_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Kidney_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Kidney_graph.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified graphs/last_official_ASCTB_release/ccf_Knee_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Liver_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Liver_graph.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified graphs/last_official_ASCTB_release/ccf_Lung_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Lung_graph.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.pdf
Binary file not shown.
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Ovary_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Pancreas_graph.pdf
Binary file not shown.
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Prostate_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Skin_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Spleen_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Spleen_graph.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified graphs/last_official_ASCTB_release/ccf_Thymus_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Ureter_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.pdf
Binary file not shown.
Binary file modified graphs/last_official_ASCTB_release/ccf_Uterus_graph.pdf
Binary file not shown.
77 changes: 44 additions & 33 deletions logs/Heart_AS_CT_strict_log.tsv
Original file line number Diff line number Diff line change
@@ -1,78 +1,89 @@
s slabel user_slabel o olabel user_olabel
CL:0000057 fibroblast fibroblast UBERON:0002049 vasculature vasculature
CL:0000057 fibroblast fibroblast UBERON:0002080 heart right ventricle heart right ventricle
CL:0000057 fibroblast fibroblast UBERON:0001625 right coronary artery right coronary artery
CL:0000057 fibroblast fibroblast UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0000057 fibroblast fibroblast UBERON:0035422 circumflex branch of left coronary artery circumflex branch of left coronary artery
CL:0000057 fibroblast fibroblast UBERON:0035374 small cardiac vein small cardiac vein
CL:0000057 fibroblast fibroblast UBERON:0009687 middle cardiac vein middle cardiac vein
CL:0000057 fibroblast fibroblast UBERON:0011820 atrioventricular region atrioventricular region
CL:0000057 fibroblast fibroblast UBERON:0005438 coronary sinus coronary sinus
CL:0000057 fibroblast fibroblast UBERON:0002348 Epicardium epicardium
CL:0000057 fibroblast fibroblast UBERON:0002094 interventricular septum interventricular septum
CL:0000057 fibroblast fibroblast UBERON:0006958 great vein of heart great cardiac vein
CL:0000057 fibroblast fibroblast UBERON:0002348 Epicardium epicardium
CL:0000057 fibroblast fibroblast UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0000057 fibroblast fibroblast UBERON:0002084 heart left ventricle heart left ventricle
CL:0000057 fibroblast fibroblast UBERON:0009687 middle cardiac vein middle cardiac vein
CL:0000057 fibroblast fibroblast UBERON:0035374 small cardiac vein small cardiac vein
CL:0000057 fibroblast fibroblast UBERON:0002080 heart right ventricle heart right ventricle
CL:0000057 fibroblast fibroblast UBERON:0011820 atrioventricular region atrioventricular region
CL:0000057 fibroblast fibroblast UBERON:0035422 circumflex branch of left coronary artery circumflex branch of left coronary artery
CL:0000057 fibroblast fibroblast UBERON:0002049 vasculature vasculature
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002084 heart left ventricle heart left ventricle
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002094 interventricular septum interventricular septum
CL:0000057 fibroblast fibroblast UBERON:0006958 great vein of heart great cardiac vein
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0006958 great vein of heart great cardiac vein
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002094 interventricular septum interventricular septum
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002080 heart right ventricle heart right ventricle
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0009687 middle cardiac vein middle cardiac vein
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002084 heart left ventricle heart left ventricle
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002348 Epicardium epicardium
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002137 Aortic valve Aortic valve
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002134 Tricuspid valve Tricuspid valve
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002146 Pulmonary Valve Pulmonary Valve
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002080 heart right ventricle heart right ventricle
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002135 Mitral valve Mitral valve
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002146 Pulmonary Valve Pulmonary Valve
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0002134 Tricuspid valve Tricuspid valve
CL:0000077 mesothelial cell mesothelial cell UBERON:0002348 Epicardium epicardium
CL:0000136 fat cell fat cell UBERON:0002352 atrioventricular node atrioventricular node
CL:0000136 fat cell fat cell UBERON:0006566 left ventricle myocardium left ventricle myocardium
CL:0000136 fat cell fat cell UBERON:0002094 interventricular septum interventricular septum
CL:0000136 fat cell fat cell UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000136 fat cell fat cell UBERON:0002080 heart right ventricle heart right ventricle
CL:0000136 fat cell fat cell UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000136 fat cell fat cell UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0000235 macrophage macrophage UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000235 macrophage macrophage UBERON:0006566 left ventricle myocardium left ventricle myocardium
CL:0000136 fat cell fat cell UBERON:0006566 left ventricle myocardium left ventricle myocardium
CL:0000136 fat cell fat cell UBERON:0002094 interventricular septum interventricular septum
CL:0000136 fat cell fat cell UBERON:0002352 atrioventricular node atrioventricular node
CL:0000235 macrophage macrophage UBERON:0002094 interventricular septum interventricular septum
CL:0000235 macrophage macrophage UBERON:0006567 right ventricle myocardium right ventricle myocardium
CL:0000235 macrophage macrophage UBERON:0002080 heart right ventricle heart right ventricle
CL:0000235 macrophage macrophage UBERON:0002348 Epicardium epicardium
CL:0000235 macrophage macrophage UBERON:0006566 left ventricle myocardium left ventricle myocardium
CL:0000235 macrophage macrophage UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0000235 macrophage macrophage UBERON:0002080 heart right ventricle heart right ventricle
CL:0000235 macrophage macrophage UBERON:0006567 right ventricle myocardium right ventricle myocardium
CL:0000359 vascular associated smooth muscle cell vascular associated smooth muscle cell UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000235 macrophage macrophage UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000359 vascular associated smooth muscle cell vascular associated smooth muscle cell UBERON:0005438 coronary sinus coronary sinus
CL:0000359 vascular associated smooth muscle cell vascular associated smooth muscle cell UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000359 vascular associated smooth muscle cell vascular associated smooth muscle cell UBERON:0002080 heart right ventricle heart right ventricle
CL:0000359 vascular associated smooth muscle cell vascular associated smooth muscle cell UBERON:0002348 Epicardium epicardium
CL:0000542 lymphocyte lymphocyte UBERON:0002094 interventricular septum interventricular septum
CL:0000542 lymphocyte lymphocyte UBERON:0002080 heart right ventricle heart right ventricle
CL:0000542 lymphocyte lymphocyte UBERON:0002094 interventricular septum interventricular septum
CL:0000542 lymphocyte lymphocyte UBERON:0002348 Epicardium epicardium
CL:0000542 lymphocyte lymphocyte UBERON:0006566 left ventricle myocardium left ventricle myocardium
CL:0000542 lymphocyte lymphocyte UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000542 lymphocyte lymphocyte UBERON:0006566 left ventricle myocardium left ventricle myocardium
CL:0000542 lymphocyte lymphocyte UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0000746 cardiac muscle cell cardiac muscle cell UBERON:0002080 heart right ventricle heart right ventricle
CL:0000746 cardiac muscle cell cardiac muscle cell UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000746 cardiac muscle cell cardiac muscle cell UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0000746 cardiac muscle cell cardiac muscle cell UBERON:0006567 right ventricle myocardium right ventricle myocardium
CL:0000746 cardiac muscle cell cardiac muscle cell UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0000746 cardiac muscle cell cardiac muscle cell UBERON:0006566 left ventricle myocardium left ventricle myocardium
CL:0000746 cardiac muscle cell cardiac muscle cell UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0000746 cardiac muscle cell cardiac muscle cell UBERON:0002094 interventricular septum interventricular septum
CL:0000746 cardiac muscle cell cardiac muscle cell UBERON:0002080 heart right ventricle heart right ventricle
CL:0001056 dendritic cell, human dendritic cell, human UBERON:0002094 interventricular septum interventricular septum
CL:0001056 dendritic cell, human dendritic cell, human UBERON:0002080 heart right ventricle heart right ventricle
CL:0001056 dendritic cell, human dendritic cell, human UBERON:0006566 left ventricle myocardium left ventricle myocardium
CL:0001056 dendritic cell, human dendritic cell, human UBERON:0002079 left cardiac atrium left cardiac atrium
CL:0001056 dendritic cell, human dendritic cell, human UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0001056 dendritic cell, human dendritic cell, human UBERON:0002080 heart right ventricle heart right ventricle
CL:0002542 endothelial cell endothelial cell of artery UBERON:0005438 coronary sinus coronary sinus
CL:0002542 endothelial cell endothelial cell of artery UBERON:0011820 atrioventricular region atrioventricular region
CL:0002542 endothelial cell endothelial cell of artery UBERON:0035422 circumflex branch of left coronary artery circumflex branch of left coronary artery
CL:0002542 endothelial cell endothelial cell of artery UBERON:0001625 right coronary artery right coronary artery
CL:0002542 endothelial cell endothelial cell of artery UBERON:0002084 heart left ventricle heart left ventricle
CL:0002542 endothelial cell endothelial cell of artery UBERON:0035374 small cardiac vein small cardiac vein
CL:0002542 endothelial cell endothelial cell of artery UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0002542 endothelial cell endothelial cell of artery UBERON:0002094 interventricular septum interventricular septum
CL:0002542 endothelial cell endothelial cell of artery UBERON:0006958 great vein of heart great cardiac vein
CL:0002542 endothelial cell endothelial cell of artery UBERON:0002080 heart right ventricle heart right ventricle
CL:0002542 endothelial cell endothelial cell of artery UBERON:0009687 middle cardiac vein middle cardiac vein
CL:0002573 Schwann Cell Schwann cell UBERON:0002348 Epicardium epicardium
CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell of the coronary artery UBERON:0035422 circumflex branch of left coronary artery circumflex branch of left coronary artery
CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell of the coronary artery UBERON:0011820 atrioventricular region atrioventricular region
CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell of the coronary artery UBERON:0002078 right cardiac atrium right cardiac atrium
CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell of the coronary artery UBERON:0035422 circumflex branch of left coronary artery circumflex branch of left coronary artery
CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell of the coronary artery UBERON:0035374 small cardiac vein small cardiac vein
CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell of the coronary artery UBERON:0001625 right coronary artery right coronary artery
CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell of the coronary artery UBERON:0011820 atrioventricular region atrioventricular region
CL:0010008 cardiac endothelial cell cardiac endothelial cell UBERON:0002049 vasculature vasculature
CL:1000147 heart valve cell heart valve cell UBERON:0002080 heart right ventricle heart right ventricle
CL:1000477 cardiac pacemaker cell of sinoatrial node cardiac pacemaker cell of sinoatrial node UBERON:0002352 atrioventricular node atrioventricular node
CL:1000477 cardiac pacemaker cell of sinoatrial node cardiac pacemaker cell of sinoatrial node UBERON:0002079 left cardiac atrium left cardiac atrium
CL:1000477 cardiac pacemaker cell of sinoatrial node cardiac pacemaker cell of sinoatrial node UBERON:0002353 bundle of His atrioventricular bundle
CL:2000066 cardiac ventricle fibroblast cardiac ventricle fibroblast UBERON:0006567 right ventricle myocardium right ventricle myocardium
CL:1000477 cardiac pacemaker cell of sinoatrial node cardiac pacemaker cell of sinoatrial node UBERON:0002079 left cardiac atrium left cardiac atrium
CL:1000477 cardiac pacemaker cell of sinoatrial node cardiac pacemaker cell of sinoatrial node UBERON:0002352 atrioventricular node atrioventricular node
CL:2000066 cardiac ventricle fibroblast cardiac ventricle fibroblast UBERON:0006566 left ventricle myocardium left ventricle myocardium
CL:2000066 cardiac ventricle fibroblast cardiac ventricle fibroblast UBERON:0002049 vasculature vasculature
CL:2000066 cardiac ventricle fibroblast cardiac ventricle fibroblast UBERON:0006567 right ventricle myocardium right ventricle myocardium
CL:2000067 cardiac atrium fibroblast cardiac atrium fibroblast UBERON:0002079 left cardiac atrium left cardiac atrium
CL:2000067 cardiac atrium fibroblast cardiac atrium fibroblast UBERON:0002049 vasculature vasculature
CL:2000067 cardiac atrium fibroblast cardiac atrium fibroblast UBERON:0002078 right cardiac atrium right cardiac atrium
2 changes: 2 additions & 0 deletions logs/Kidney_AS_CT_strict_log.tsv
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@ CL:0000990 conventional dendritic cell conventional dendritic cell UBERON:000521
CL:0001056 dendritic cell, human dendritic cell, human UBERON:0005215 kidney interstitium kidney interstitium
CL:0001058 plasmacytoid dendritic cell, human plasmacytoid dendritic cell, human UBERON:0005215 kidney interstitium kidney interstitium
CL:0002138 endothelial cell of lymphatic vessel endothelial cell of lymphatic vessel UBERON:0002042 lymphatic vessel endothelium lymphatic vessel endothelium
CL:0002201 renal beta-intercalated cell renal beta-intercalated cell UBERON:0001232 collecting duct of renal tubule collecting duct of renal tubule
CL:1000691 kidney interstitial myofibroblast kidney interstitial myofibroblast UBERON:0003918 kidney mesenchyme kidney mesenchyme
CL:1000692 kidney interstitial fibroblast kidney interstitial fibroblast UBERON:0003918 kidney mesenchyme kidney mesenchyme
CL:1000718 kidney inner medulla collecting duct principal cell kidney inner medulla collecting duct principal cell UBERON:0009095 tip of renal papilla tip of renal papilla
Expand All @@ -24,3 +25,4 @@ CL:1001318 renal interstitial pericyte renal interstitial pericyte UBERON:000391
CL:4030009 epithelial cell of proximal tubule segment 1 epithelial cell of proximal tubule segment 1 UBERON:0004196 proximal convoluted tubule segment 1 proximal convoluted tubule segment 1
CL:4030010 epithelial cell of proximal tubule segment 2 epithelial cell of proximal tubule segment 2 UBERON:0004197 proximal convoluted tubule segment 2 proximal convoluted tubule segment 2
CL:4030011 epithelial cell of proximal tubule segment 3 epithelial cell of proximal tubule segment 3 UBERON:0001290 proximal straight tubule proximal straight tubule
CL:4030022 renal medullary fibroblast medullary fibroblast UBERON:0003918 kidney mesenchyme kidney mesenchyme
Loading

0 comments on commit 99c686b

Please sign in to comment.