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Cell type prioritization in single-cell data

R 111 12 Updated Oct 23, 2024
Jupyter Notebook 5 Updated Feb 12, 2025

Aligning gene expression trajectories of single-cell reference and query systems

Jupyter Notebook 59 7 Updated Oct 14, 2024

Workshops presented by the Gladstone Bioinformatics Core

HTML 218 72 Updated Feb 21, 2025

A minimal working example of using Snakemake log files with R scripts

Python 1 Updated Nov 17, 2020

Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models

HTML 12 Updated Nov 20, 2024

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

R 443 96 Updated May 21, 2024

Convert Seurat objects to 10x Genomics Loupe files.

R 111 15 Updated Feb 5, 2025

interactive force-directed graph layouts within RStudio

JavaScript 4 Updated Dec 3, 2024

Estimated marginal means

R 374 32 Updated Feb 13, 2025

❗ This is a read-only mirror of the CRAN R package repository. mixhvg — Mixture of Multiple Highly Variable Feature Selection Methods

R 1 Updated Sep 16, 2024

Benchmarking analysis of data integration tools

Python 333 65 Updated Jan 14, 2025

R toolkit for the analysis of single-cell chromatin data

R 349 96 Updated Jan 17, 2025

A simple Snakemake profile for Slurm without --cluster-config

Shell 150 18 Updated Jun 20, 2024
R 163 27 Updated Aug 30, 2024

Download PDF from Sci-Hub automatically For Zotero7

TypeScript 451 6 Updated Feb 18, 2025

Mixed-effect model to test differences in cell type proportions from single-cell data, in R

R 99 8 Updated Feb 22, 2025

Using Quarto together with Nextflow

Nextflow 6 2 Updated Jul 15, 2024

Tip and tricks for BAM files

84 10 Updated Aug 3, 2018

A template for standard compliant snakemake-workflows

Python 91 34 Updated Aug 18, 2023

Automatic selection of number of principal components

R 15 1 Updated Jun 27, 2022

A DRAFT, early stage book on snakemake.

Python 18 Updated Nov 1, 2023

R package for the joint analysis of multiple single-cell RNA-seq datasets

R 204 40 Updated Feb 26, 2024

Github Pages template for personal, portfolio-based websites; forked from mmistakes/minimal-mistakes

JavaScript 13,319 45,794 Updated Feb 22, 2025

R package for detecting doublets in single-cell RNA sequencing data

R 443 115 Updated Feb 3, 2025

30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos ma…

Python 44,728 8,549 Updated Feb 11, 2025

Open-Source Software for Omic Data Analysis and Visualization

R 34 10 Updated Feb 10, 2025

Shiny apps for NGS etc based on reusable components created using Shiny modules

HTML 76 21 Updated Jan 16, 2025

Feature selection for preserving biological trajectories in single-cell data

Python 17 5 Updated Apr 7, 2024
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