Node data type in loglikelihood

.github/workflows/TagBot.yml

@@ -9,3 +9,13 @@ jobs:
       - uses: JuliaRegistries/TagBot@v1
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
+          changelog: |
+            ## {{ package }} {{ version }}
+            
+            {% if custom %}
+            {{ custom }}
+            {% endif %}
+            
+            {% if previous_release %}
+            [Diff since {{ previous_release }}]({{ compare_url }})
+            {% endif %}

.zenodo.json

@@ -0,0 +1,20 @@
+{ "description": "<p>Genetic sequence simulation and loglikelihood calculations of phylogenetic trees using Felsenstein's (1981) tree pruning algorithm with Julia</p>",
+  "language": "eng", 
+  "license": "MIT", 
+  "upload_type": "software", 
+  "creators": [
+    {
+        "orcid": "0000-0002-3373-5009", 
+        "affiliation": "University of Guelph", 
+        "name": "Angevaare, Justin"
+    }, 
+    {
+        "affiliation": "University of Guelph", 
+        "name": "Feng, Zeny"
+    }, 
+    {
+        "affiliation": "University of Calgary", 
+        "name": "Deardon, Rob"
+    }
+  ] 
+} 

Project.toml

@@ -1,7 +1,7 @@
 name = "PhyloModels"
 uuid = "6465ae08-de3a-5dbe-bda8-3920f6a01ab7"
 authors = ["Justin Angevaare <justinangevaare@gmail.com>"]
-version = "0.3.1"
+version = "0.3.2"
 
 [deps]
 GeneticBitArrays = "5d6f8c34-7f74-4dab-a49b-48b3414fbfce"

src/loglikelihood.jl

@@ -1,7 +1,15 @@
+"""
+Calculate the loglikelihood of a rooted phylogenetic tree. Genetic 
+sequences for each leaf must be provided in a Dict, using Node ID as
+the key
+"""
 function loglikelihood(tree::Tree,
                        mod::T,
-                       node_data::N;
-                       output_calculations::Bool=false) where {T <: NASM, N <: Union{NodeDNA, NodeRNA}}
+                       node_data::ND;
+                       output_calculations::Bool=false) where {
+                       T <: NASM, 
+                       N <: Union{NodeDNA, NodeRNA}, 
+                       ND <: Dict{Int64, N}}
   # Error checking
   if !all(map(x -> x in keys(node_data), findleaves(tree)))
     error("Some leaves are missing sequence data")