Lee & Wing 2021

Absolute quantitation of individual SARS-CoV-2 RNA molecules: a new paradigm for infection dynamics and variant differences

This repository contains source codes for reproducing figures presented in the Lee & Wing SARS-CoV-2 smFISH manuscript eLife link.

Check out the promotional video explaining our work (simple English) - Lab twitter link.

Data table availability

Data tables used for figure generation can be found under smFISH/data_plotting/data/

Code availability

Bigfish analysis pipeline and other codes used for the image analysis can be found under
smFISH/analysis-codes/
Scripts used to generate the presented figures are available in the R Markdown format under
smFISH/data_plotting/

Contact

@ilandavislab
@McKeatingLab
@castello_lab