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Remove all direct dependencies #16

Merged
merged 34 commits into from
Apr 8, 2024
Merged

Remove all direct dependencies #16

merged 34 commits into from
Apr 8, 2024

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kmnhan
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@kmnhan kmnhan commented Apr 3, 2024 •
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Remove all direct dependencies for streamlining the installation procedure.

@kmnhan kmnhan self-assigned this Apr 3, 2024
@kmnhan kmnhan added the enhancement New feature or request label Apr 4, 2024
@kmnhan kmnhan marked this pull request as ready for review April 8, 2024 13:12
kmnhan added 27 commits April 8, 2024 22:29
@kmnhan
feat(fit): directly base models on lmfit.Model
3a14025 
BREAKING CHANGE: This change disables the use of guess_fit. All fitting must be performed in the syntax recommended by lmfit. Addition of a accessor or a convenience function for coordinate-aware fitting is planned in the next release.
@kmnhan
fix: disable itool downsample
c296f74
@kmnhan
fix: set autodownsample off for colorbar
51625fc
@kmnhan
refactor(dtool): cleanup unused code
1c46bd0
@kmnhan
feat: add derivative module with minimum gradient implementation
538efe4
@kmnhan
refactor: rename module to image and add citation
4ca9ff5
@kmnhan
docs: update minimum gradient documentation
5f4cc66
@kmnhan
fix(analysis.image): dtype safety of cfunc
8c0bda1
@kmnhan
feat: add gaussian filter and laplacian
d6dcc96
@kmnhan
fix(analysis.image): remove critical typo
7ddc649
@kmnhan
docs: improve readability
23a607f
@kmnhan
refactor(analysis.image): add documentation and reorder functions
b0e61ea
@kmnhan
feat: add scaled laplace
3617392
@kmnhan
feat(plotting): add N argument to plot_array_2d
8f3511e
@kmnhan
feat: add 2D curvature, finally closes #14
36f9786
@kmnhan
refactor: update dtool to use new functions
dafa307
@kmnhan
chore(deps): update dependencies
f62f8e2
@kmnhan
chore(deps): update minimum versions and env configurations
684dcf5
@kmnhan
chore(deps): remove importlib metadata
d87201a
@kmnhan
chore(deps): remove igor2 direct dependency from requirements.txt
0b67e19
@kmnhan
tests: add tests for image and shift
cabd192
@kmnhan
docs: update bibliography
e2651da
@kmnhan
docs: update conf.py
3e800cf
@kmnhan
refactor(fit): unify dynamic function names
66af82c 
BREAKING CHANGE: `PolyFunc` is now `PolynomialFunction`, and `FermiEdge2dFunc` is now `FermiEdge2dFunction`. The corresponding model names are unchanged.
@kmnhan
fix(fit.functions): polynomial function now works for xarray input
9db65c4
@kmnhan
fix(dynamic): properly broadcast xarray input
2f3ac2b
@kmnhan
tests: add tests for fitting functions
5e1243b
kmnhan added 7 commits April 8, 2024 22:31
@kmnhan
feat(itool): add copy code to PlotItem vb menu
59d64eb 
For each plot in imagetool, a new 'copy selection code' button has been added to the right-click menu that copies the code that can slice the data to recreate the data shown in the plot.
@kmnhan
perf(itool): add explicit signatures to fastbinning
8c11db2 
Speedup initial binning by providing explicit signatures.
@kmnhan
tests: reduce test time by specifying explicit path
cb7f47e 
This will not trigger directory recursion, so tests will run a bit faster
@kmnhan
docs: fix typo
e52827f
@kmnhan
chore(deps): update dependency to use igor2>=0.5.6 now on conda-forge
f9cbc9b
@kmnhan
chore: add setuptools_scm configuration
ba113d9
@kmnhan
ci(github): swap pip installation order
6194cd2
@kmnhan kmnhan merged commit afa4722 into main Apr 8, 2024
3 of 4 checks passed
@kmnhan kmnhan deleted the independence branch April 8, 2024 13:32
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