Copy outputs to starting directory

runs/hindcasts/templates/hindcast/01-run.sh

@@ -1,5 +1,7 @@
 #!/bin/bash
 
+OUTDIR=$1
+
 . ./99-post_funcs.sh --source-only
 
 STARTSEC=`date +%s`
@@ -14,9 +16,9 @@ FIRE_NAME=`echo $LOCAL_SCRATCH | rev | cut -d/ -f1 | rev | cut -d_ -f1`
 DATE_START=`echo $LOCAL_SCRATCH | rev | cut -d/ -f1 | rev | cut -d_ -f2`
 TIME_START=`echo $LOCAL_SCRATCH | rev | cut -d/ -f1 | rev | cut -d_ -f3`
 TIMESTAMP_START="${DATE_START}_${TIME_START}"
-HINDCAST_DIR=$ELMFIRE_BASE_DIR/runs/hindcasts/runs/$FIRE_NAME/${FIRE_NAME}_$TIMESTAMP_START
-rm -f -r $HINDCAST_DIR
-mkdir -p $HINDCAST_DIR 2> /dev/null
+#HINDCAST_DIR=$ELMFIRE_BASE_DIR/runs/hindcasts/runs/$FIRE_NAME/${FIRE_NAME}_$TIMESTAMP_START
+#rm -f -r $HINDCAST_DIR
+#mkdir -p $HINDCAST_DIR 2> /dev/null
 
 SOCKETS=`lscpu | grep 'Socket(s)' | cut -d: -f2 | xargs`
 CORES_PER_SOCKET=`lscpu | grep 'Core(s) per socket' | cut -d: -f2 | xargs`
@@ -32,8 +34,8 @@ progress_message "Postprocessing complete, cleaning up"
 
 rm -f *.aux.xml *.bsq *.hdr *.aux.xml
 
-cp -f -r * $HINDCAST_DIR
-cd $HINDCAST_DIR
+#cp -f -r * $HINDCAST_DIR
+#cd $HINDCAST_DIR
 
 progress_message "Calculating fitness"
 ./04-fitness.sh >& fitness.log
@@ -49,6 +51,11 @@ done
 mv active* ./fuel/ 2> /dev/null
 mv already* ./fuel/ 2> /dev/null
 
+rm -f -r $OUTDIR
+mkdir -p $OUTDIR
+
+cp -f -r * $OUTDIR
+cd $OUTDIR
 rm -f -r $LOCAL_SCRATCH
 
 ENDSEC=`date +%s`