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.Rproj.user/65FDE9DB/sources/prop/INDEX

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.gitignore

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 .Rhistory
 .RData
 .Ruserdata
+/.Rproj.user
+/.Rproj.user
+/.Rproj.user
+.Rproj.user/65FDE9DB/pcs/source-pane.pper

README.md

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-Welcome! 
 
-This is a minimal example of a book based on R Markdown and **bookdown** (https://github.com/rstudio/bookdown). 
+- **UCSCXenaShiny** is an R package for interactively exploring UCSC Xena datasets. It is mainly designed to provide a web app (built on the top of [`{shiny}`](https://shiny.rstudio.com/) framework and [`{UCSCXenaTools}`](https://github.com/ropensci/UCSCXenaTools/) package) for downloading, analyzing and visualizing datasets from [UCSC Xena](https://xenabrowser.net/datapages/). 
+- In the latest version, the application can support both general and personalized  tumor molecular analysis with versatile functional modules and user-friendly interface layouts. Overall, our tool aims to make best use of public omics data from UCSC Xena and assist broad user community with precision oncology research.  
+- Here, we have prepared the tutorial book (https://github.com/lishensuo/UCSCXenaShiny_Book.io) to introduce the detailed usage of UCSCXenaShiny based on R Markdown and [bookdown](https://github.com/rstudio/bookdown). 
 
-This template provides a skeleton file structure that you can edit to create your book. 
-
-The contents inside the .Rmd files provide some pointers to help you get started, but feel free to also delete the content in each file and start fresh.
-
-Additional resources:
-
-The **bookdown** book: https://bookdown.org/yihui/bookdown/
-
-The **bookdown** package reference site: https://pkgs.rstudio.com/bookdown
+![p0000](https://raw.githubusercontent.com/lishensuo/images2/main/img01/p0000.png)

index.Rmd

@@ -25,7 +25,7 @@ github-repo: rstudio/bookdown-demo
 knitr::include_graphics('images/p0000.png')
 ```
 
-Here, we have prepared the tutorial book to introduce the detailed usage of UCSCXenaShiny. Firstly, we will start with the basic knowledge of UCSC Xena repository and its data hubs in **Chapter \@ref(intro)**. Then, the following chapters can be generally divided into two parts for the usage of R package and Shiny App:
+Here, we have prepared the tutorial book to introduce the detailed usage of UCSCXenaShiny based on R Markdown and [bookdown](https://github.com/rstudio/bookdown). Firstly, we will start with the basic knowledge of UCSC Xena repository and its data hubs in **Chapter \@ref(intro)**. Then, the following chapters can be generally divided into two parts for the usage of R package and Shiny App:
 
 #### Part Ⅰ {-}