v5.0.0
Highlights
- Upgrade the default species analysis in the
Ag3
class to use a new
set of improved ancestry-informative markers (AIMs). Note that this
includes a small change to the values in theaim_species
column of
the sample metadata: the value "intermediate_arabiensis_gambiae" has
been replaced by "intermediate_gambcolu_arabiensis" for consistency
with AIM naming conventions used elsewhere. - Add
Ag3.aim_calls()
andAg3.plot_aim_heatmap()
functions for
accessing and plotting ancestry-informative marker (AIM) genotypes
(GH236). - Add site filters tracks to IGV via
Ag3.view_alignments()
(GH246).
What's Changed
- Add new and improved AIMs by @alimanfoo in #245
- Maintenance 2022-05-31 by @alimanfoo in #247
- Prep v5.0.0 by @alimanfoo in #249
Full Changelog: v4.4.0...v5.0.0