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v5.0.0

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@alimanfoo alimanfoo released this 31 May 19:12
· 867 commits to master since this release
5ff3481

Highlights

  • Upgrade the default species analysis in the Ag3 class to use a new
    set of improved ancestry-informative markers (AIMs). Note that this
    includes a small change to the values in the aim_species column of
    the sample metadata: the value "intermediate_arabiensis_gambiae" has
    been replaced by "intermediate_gambcolu_arabiensis" for consistency
    with AIM naming conventions used elsewhere.
  • Add Ag3.aim_calls() and Ag3.plot_aim_heatmap() functions for
    accessing and plotting ancestry-informative marker (AIM) genotypes
    (GH236).
  • Add site filters tracks to IGV via Ag3.view_alignments()
    (GH246).

What's Changed

Full Changelog: v4.4.0...v5.0.0