change back to actual notebooks

maps-as-data · Nov 13, 2024 · 458b9c1 · 458b9c1
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Showing 3 changed files with 19 additions and 54 deletions.
diff --git a/.github/workflows/check_notebooks.yml b/.github/workflows/check_notebooks.yml
@@ -34,27 +34,27 @@
     
           - name: Install dependencies
             run: |
-              pip install papermill ipython jupyter
-#              python -m pip install wheel
-#              python -m pip install numpy==1.26.4 torch==2.2.2 torchvision==0.17.2 -f https://download.pytorch.org/whl/torch_stable.html
-#              python -m pip install -r requirements.txt
-#
-#          - name: Clone DPText-DETR
-#            run: |
-#              git clone https://github.com/maps-as-data/DPText-DETR.git
-#    
-#          - name: Clone DeepSolo
-#            run: |
-#              git clone https://github.com/maps-as-data/DeepSolo.git
-#    
-#          - name: Hugging Face CLI
-#            run: |
-#              pip install -U "huggingface_hub[cli]"
-#              huggingface-cli download rwood-97/DPText_DETR_ArT_R_50_poly art_final.pth --local-dir .
-#              huggingface-cli download rwood-97/DeepSolo_ic15_res50 ic15_res50_finetune_synth-tt-mlt-13-15-textocr.pth --local-dir .
+              python -m pip install wheel
+              python -m pip install numpy==1.26.4 torch==2.2.2 torchvision==0.17.2 -f https://download.pytorch.org/whl/torch_stable.html
+              python -m pip install -r requirements.txt
+              pip install papermill
+
+          - name: Clone DPText-DETR
+            run: |
+              git clone https://github.com/maps-as-data/DPText-DETR.git
+    
+          - name: Clone DeepSolo
+            run: |
+              git clone https://github.com/maps-as-data/DeepSolo.git
+    
+          - name: Hugging Face CLI
+            run: |
+              pip install -U "huggingface_hub[cli]"
+              huggingface-cli download rwood-97/DPText_DETR_ArT_R_50_poly art_final.pth --local-dir .
+              huggingface-cli download rwood-97/DeepSolo_ic15_res50 ic15_res50_finetune_synth-tt-mlt-13-15-textocr.pth --local-dir .
 
           - name: Run notebooks
             run: |
               find . -name "*.ipynb" -exec sed -Ei "s/num_epochs=.?.?/num_epochs=1/g" {} +
               find . -name "*.ipynb" -exec sed -i "s/annotator.annotate/#annotator.annotate/g" {} +
-              find . -name "*test.ipynb" -print0 | xargs -0 -S 10000 -I {} -t bash -c 'papermill --cwd $(dirname {}) --log-output {} {} || exit 255' 
+              find . -name "*.ipynb" -print0 | xargs -0 -S 10000 -I {} -t bash -c 'papermill --cwd $(dirname {}) --log-output {} {} || exit 255' 
diff --git a/.gitignore b/.gitignore
@@ -21,5 +21,3 @@ worked_examples/non-geospatial/classification_plant_phenotype/*
 !worked_examples/non-geospatial/classification_plant_phenotype/Pipeline.ipynb
 !worked_examples/non-geospatial/classification_plant_phenotype/annotations_phenotype_open_access/
 !worked_examples/non-geospatial/classification_plant_phenotype/dataset/
-
-!worked_examples/geospatial/*classification_one_inch_maps/test.ipynb
diff --git a/worked_examples/geospatial/classification_one_inch_maps/test.ipynb b/worked_examples/geospatial/classification_one_inch_maps/test.ipynb