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Tutorial on large language models for genomics

188 43 Updated Feb 8, 2025

Python logging made (stupidly) simple

Python 20,932 718 Updated Mar 1, 2025

Some HackerRank challenges about time series analysis, association rule learning, and so on.

Python 3 Updated Jan 5, 2021

Flexible linear mixed model framework for Genome Wide Association Studies

Nextflow 18 Updated Feb 24, 2025

rattler-build is a universal package builder for Windows, macOS and Linux

Rust 251 62 Updated Feb 28, 2025

A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.

Python 32 Updated Jan 6, 2025

DIVA: A Dirichlet Process Mixtures Based Incremental Deep Clustering Algorithm via Variational Auto-Encoder

Jupyter Notebook 9 1 Updated Sep 18, 2023

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

Python 353 106 Updated Jun 7, 2023

Official code repo for the O'Reilly Book - "Hands-On Large Language Models"

Jupyter Notebook 5,404 1,189 Updated Feb 15, 2025

Visualizer for neural network, deep learning and machine learning models

JavaScript 29,519 2,854 Updated Mar 1, 2025

Biological foundation modeling from molecular to genome scale

Jupyter Notebook 1,322 163 Updated Feb 26, 2025

KEGG Module Evaluation Tool

Python 28 6 Updated Nov 15, 2023

🐦 Quickly annotate data from the comfort of your Jupyter notebook

Python 778 129 Updated Apr 4, 2024

Fast and accurate Phylogeny estimation with self-attention Networks

Python 31 5 Updated Jan 27, 2025

Divide and conquer a phylogenetic tree

Python 2 Updated Jul 31, 2024

expressions on VCFs

Rust 68 2 Updated Feb 20, 2025

Immutable and statically-typeable DataFrames with runtime type and data validation

Python 453 34 Updated Jan 26, 2025

A Python library for amortized Bayesian workflows using generative neural networks.

Python 429 60 Updated Mar 1, 2025

Follow up to Grace Blackwell's 661k dataset, for 2023

Python 92 9 Updated Feb 25, 2025

Genome browser and variant annotation

C++ 295 8 Updated Feb 19, 2025

Gene tree - species tree reconciliation from gene tree distributions

C++ 26 5 Updated Nov 1, 2024

Multiple Protein Structure Alignment at Scale with FoldMason

C 157 16 Updated Feb 14, 2025

holehe allows you to check if the mail is used on different sites like twitter, instagram and will retrieve information on sites with the forgotten password function.

Python 8,377 936 Updated Sep 10, 2024

SplitsTree App

Java 106 8 Updated Feb 17, 2025

accurate LiftOver tool for new genome assemblies

Rust 120 13 Updated Aug 8, 2024

Fast and accurate coordinate conversion between assemblies

C++ 112 17 Updated Sep 23, 2024

Eukaryotic Genome Annotation Pipeline

Python 333 89 Updated Jan 21, 2025

🍃 Organic Maps is a free Android & iOS offline maps app for travelers, tourists, hikers, and cyclists. It uses crowd-sourced OpenStreetMap data and is developed with love by the community. No ads, …

C++ 10,638 1,033 Updated Mar 2, 2025

A library for easy, fast, and efficient reading & writing of PLINK Bed files

Rust 75 9 Updated Nov 2, 2024
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