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segmentation.csv for tests
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Riley-Grindle committed Sep 20, 2024
1 parent 5c8c593 commit 4130475
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Showing 2 changed files with 9 additions and 41 deletions.
8 changes: 4 additions & 4 deletions assets/samplesheet.csv
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@@ -1,5 +1,5 @@
id,data_directory,mt_cc_rm_genes
0dpa,${projectDir}/assets/test_data/0dpa/,${projectDir}/auxillaryGeneFiles/danioRerio.aux.features.csv
1dpa,${projectDir}/assets/test_data/1dpa/,${projectDir}/auxillaryGeneFiles/danioRerio.aux.features.csv
2dpa,${projectDir}/assets/test_data/2dpa/,${projectDir}/auxillaryGeneFiles/danioRerio.aux.features.csv
4dpa,${projectDir}/assets/test_data/4dpa/,${projectDir}/auxillaryGeneFiles/danioRerio.aux.features.csv
0dpa,assets/test_data/0dpa/,auxillaryGeneFiles/danioRerio.aux.features.csv
1dpa,assets/test_data/1dpa/,auxillaryGeneFiles/danioRerio.aux.features.csv
2dpa,assets/test_data/2dpa/,auxillaryGeneFiles/danioRerio.aux.features.csv
4dpa,assets/test_data/4dpa/,auxillaryGeneFiles/danioRerio.aux.features.csv
42 changes: 5 additions & 37 deletions assets/segmentation.csv
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@@ -1,37 +1,5 @@
id,kidney,spleen,lungs,all
Old_O1_kidney_88w_rep1,true,false,false,true
Old_O1_lung_88w_rep1,false,false,true,true
Old_O1_lung_88w_rep2,false,false,true,true
Old_O1_spleen_88w_rep1,false,true,false,true
Old_O1_spleen_88w_rep2,false,true,false,true
Old_O2_kidney_91w_rep1,true,false,false,true
Old_O2_kidney_91w_rep2,true,false,false,true
Old_O2_lung_91w_rep1,false,false,true,true
Old_O2_lung_91w_rep2,false,false,true,true
Old_O2_spleen_91w_rep1,false,true,false,true
Old_O2_spleen_91w_rep2,false,true,false,true
Old_O3_kidney_93w_rep1,true,false,false,true
Old_O3_lung_93w_rep1,false,false,true,true
Old_O3_spleen_93w_rep1,false,true,false,true
Old_O3_spleen_93w_rep2,false,true,false,true
Young_Y1_kidney_29w_rep1,true,false,false,true
Young_Y1_kidney_29w_rep2,true,false,false,true
Young_Y1_spleen_29w_rep1,false,true,false,true
Young_Y3_kidney_31w_rep1,true,false,false,true
Young_Y3_kidney_31w_rep2,true,false,false,true
Young_Y3_lung_31w_rep1,false,false,true,true
Young_Y3_lung_31w_rep2,false,false,true,true
Young_Y3_spleen_31w_rep1,false,true,false,true
Young_Y3_spleen_31w_rep2,false,true,false,true
Young_Y4_kidney_34w_rep1,true,false,false,true
Young_Y4_kidney_34w_rep2,true,false,false,true
Young_Y4_lung_34w_rep1,false,false,true,true
Young_Y4_lung_34w_rep2,false,false,true,true
Young_Y4_spleen_34w_rep1,false,true,false,true
Young_Y4_spleen_34w_rep2,false,true,false,true
Young_Y5_kidney_34w_rep1,true,false,false,true
Young_Y5_kidney_34w_rep2,true,false,false,true
Young_Y5_lung_34w_rep1,false,false,true,true
Young_Y5_lung_34w_rep2,false,false,true,true
Young_Y5_spleen_34w_rep1,false,true,false,true
Young_Y5_spleen_34w_rep2,false,true,false,true
id,early,late,all
0dpa,true,false,true
1dpa,true,false,true
2dpa,false,true,true
4dpa,false,true,true

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