eula update

mdibl · Aug 7, 2024 · dadf8ed · dadf8ed
1 parent c134e50
commit dadf8ed
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -18,6 +18,7 @@ process {
             mode: params.publish_dir_mode
         ]
         ext.args   = params.integration_method
+        ext.args2  = params.eula_agreement
     }
 
     withName: 'FIND_NN_CLUSTER' {

diff --git a/modules/local/plotting.nf b/modules/local/plotting.nf
@@ -15,7 +15,6 @@ process DISPLAY_REDUCTION {
     val resolutions
     val makeLoupe
     val integration_tool
-    val eula_agreement
 
 
 
@@ -35,7 +34,8 @@ process DISPLAY_REDUCTION {
     } else {
         integration_method = "NULL"
     }
-    def args = task.ext.args1  ?: 'NULL'
+    def args = task.ext.args  ?: ''
+    def eula_agreement = task.ext.args2 ?: 'NULL'
     """
     pcMax=\$(grep -i -E "^PCs used" $validation_log | perl -pe "s/^PCs.*- //g")
 

diff --git a/workflows/scscape.nf b/workflows/scscape.nf
@@ -253,8 +253,7 @@ workflow SCSCAPE {
         ch_nn_clusters_w_log.map { it[1] },
         params.resolutions,
         params.makeLoupe,
-        params.integration_method,
-        params.eula_agreement
+        params.integration_method
     )
     //CUSTOM_DUMPSOFTWAREVERSIONS (
     //    ch_versions.unique().collectFile(name: 'collated_versions.yml')