Additional functionality in bfdistance command

A --focus option was added to the bfdistance command. See that command's usage text for more details.

Refinements of enhancements to bfoperate and bvoperate commands

Operators that do bit counting now count for input filters/vectors instead of only the result.

Enhancements to bfoperate and bvoperate command s

Enhancements to bfoperate and bvoperate command s

AND, OR, XOR, etc. can now report the count of 1 bits in the result, and optionally not write the result to a file.

Thanks for Fabio Cumbo for suggesting these.

Enhancements to bfoperate command

AND, OR, and XOR can now accept more than two bloom filters.

RRR and UNRRR operations were added.

Additional error checks were added to make sure the bloom filters have the correct type for a given operation.

Thanks for Fabio Cumbo for these.

Enhancements for false positive rates

The query command now can, optionally, adjust a query's reported hits for a given experiment, to adjust for the false positive rate of the experiment's Bloom filter.

To implement this, the Bloom filter file format was modified so that when the file is built it contains information relating to the false positive rate. The old file format is still supported, but any features that require the new information are not supported for files in the old format. The program auto-detects such cases and informs the user when the request cannot be satisfied.

*NOT* a release, just a tagged snapshot of the code

Tagged this snapshot before making changes to the file format that will support new functionality.

First published release

This the first release, in conjunction with submission of an accompanying manuscript.

0.02.03

The major new feature is bit vector simplification -- all-zero and all-one vectors are automatically converted to super-compresed objects when written to file. This applies to the build and compressbf commands.

0.02.01

version bump

0.01.00

corrected the improper use of uninitialized sabutan environemnt variable