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Updated code so it can handle input shapefiles with missing .prj files -- the latest version of MERIT-Basins 'bugfix' does not include them.
Added ability to save GeoDataFrames as Python pickle files. This should speed up one of the slow steps -- reading shapefiles and constructing the spatial index. This is useful if you use the script more than once.
Added checks for the presence of the various directories to write output files, and creates them if they are not there.
Considered upgrading various Python libraries (namely pysheds and shapely), but it looks to be a major effort.