Add lecture on ethical and legal considerations for biomedical AI

mims-harvard · Mar 2, 2024 · ac6af05 · ac6af05
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diff --git a/_modules/week-12.md b/_modules/week-12.md
@@ -2,12 +2,13 @@
 title: Week 12
 ---
 
-AI-guided drug design, small-molecule generation, molecule optimization, identification and characterization of therapeutic targets, design of chemical and genetic perturbations
+Introduction to ethical frameworks, data privacy, regulation and liability aspects of AI
 
-Apr 18
-: **Module 6**{: .label .label-blue }**Lecture**{: .label .label-purple }[Generative AI Part I](/BMI702/lectures/module6/week12)
-  : [Slides](#), [Reading List](/BMI702/lectures/module6/week12)
+April 18
+: **Lecture**{: .label .label-purple }[Ethical and legal considerations for biomedical AI ](/BMI702/lectures/week14)
+  : [Slides](#), [Reading List](/BMI702/lectures/week12)
 
 Apr 19
 : **Quiz**{: .label .label-green }[Week 13 pre-class quiz](#) (due Apr 25)
   : [Canvas](https://canvas.harvard.edu/courses/134015)
+
diff --git a/_modules/week-13.md b/_modules/week-13.md
@@ -2,10 +2,10 @@
 title: Week 13
 ---
 
-Protein design and digital twins 
+AI-guided drug design, small-molecule generation, molecule optimization, identification and characterization of therapeutic targets, design of chemical and genetic perturbations
 
 Apr 25
-: **Module 6**{: .label .label-blue }**Lecture**{: .label .label-purple }[Generative AI Part II](/BMI702/lectures/module6/week13)
+: **Module 6**{: .label .label-blue }**Lecture**{: .label .label-purple }[Generative AI Part I](/BMI702/lectures/module6/week13)
   : [Slides](#), [Reading List](/BMI702/lectures/module6/week13)
 
 Apr 26
@@ -14,4 +14,4 @@ Apr 26
 
 Apr 26
 : **PSet due**{: .label .label-yellow }[PSet 3: Biomedical imaging methods and applications](#)
-  : [Canvas](https://canvas.harvard.edu/courses/134015)
+  : [Canvas](https://canvas.harvard.edu/courses/134015)
diff --git a/_modules/week-14.md b/_modules/week-14.md
@@ -2,9 +2,9 @@
 title: Week 14
 ---
 
-Introduction to ethical frameworks, data privacy, regulation and liability aspects of AI
+Protein generation and optimization, other emerging uses of generative AI
 
 May 2
-: **Lecture**{: .label .label-purple }[Ethical and legal considerations for biomedical AI ](/BMI702/lectures/week14)
-  : [Slides](#), [Reading List](/BMI702/lectures/week14)
+: **Module 6**{: .label .label-blue }**Lecture**{: .label .label-purple }[Generative AI Part II](/BMI702/lectures/module6/week14)
+  : [Slides](#), [Reading List](/BMI702/lectures/module6/week14)
 
diff --git a/lectures/module6/index.md b/lectures/module6/index.md
@@ -1,6 +1,6 @@
 ---
 layout: default
 title: M6 - Generative AI
-nav_order: 9
+nav_order: 10
 has_children: true
 ---
diff --git a/lectures/module6/week12.md b/lectures/module6/week12.md
diff --git a/lectures/module6/week13.md b/lectures/module6/week13.md
@@ -1,23 +1,21 @@
 ---
 layout: page
-title: Generative AI Part II
-nav_order: 2
+title: Generative AI Part I
+nav_order: 1
 parent: M6 - Generative AI
 description: BMI 702 - Foundations in Biomedical Informatics II - Biomedical Artificial Intelligence
 ---
 
-# Week 13 - Generative AI Part II
+# Week 13 - Generative AI Part I
 
 ## Required Reading (Week 13 Pre-Class Quiz)
 
-* [Biomarkers as drug development tools: discovery, validation, qualification and use](https://www.nature.com/articles/s41584-018-0005-9) 
-* [Machine learning identifies candidates for drug repurposing in Alzheimer's disease](https://www.nature.com/articles/s41467-021-21330-0)
-
+* [A deep learning approach to antibiotic discovery](https://www.sciencedirect.com/science/article/pii/S0092867420301021)
+* [Sparse dictionary learning recovers pleiotropy from human cell fitness screens](https://www.cell.com/cell-systems/fulltext/S2405-4712(21)00488-9) 
 
 ## Optional Reading
 
-* [Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design](https://www.medrxiv.org/content/10.1101/2023.03.19.23287458)
-* [Can you teach old drugs new tricks?](https://www.nature.com/articles/534314a)  
-* [The potential of artificial intelligence to improve patient safety: a scoping review](https://www.nature.com/articles/s41746-021-00423-6)
-* [Population-scale identification of differential adverse events before and during a pandemic](https://www.nature.com/articles/s43588-021-00138-4) 
-* [Clinical biomarkers in drug discovery and development](https://www.nature.com/articles/nrd1130)
+* [Applications of machine learning in drug discovery and development](https://www.nature.com/articles/s41573-019-0024-5) 
+* [Artificial intelligence foundation for therapeutic science](https://www.nature.com/articles/s41589-022-01131-2) 
+* [Therapeutics Data Commons](https://tdcommons.ai)
+* [Identification of disease treatment mechanisms through the multiscale interactome](https://www.nature.com/articles/s41467-021-21770-8) 
diff --git a/lectures/module6/week14.md b/lectures/module6/week14.md
@@ -0,0 +1,23 @@
+---
+layout: page
+title: Generative AI Part II
+nav_order: 2
+parent: M6 - Generative AI
+description: BMI 702 - Foundations in Biomedical Informatics II - Biomedical Artificial Intelligence
+---
+
+# Week 14 - Generative AI Part II
+
+## Required Reading (Week 14 Pre-Class Quiz)
+
+* [Biomarkers as drug development tools: discovery, validation, qualification and use](https://www.nature.com/articles/s41584-018-0005-9) 
+* [Machine learning identifies candidates for drug repurposing in Alzheimer's disease](https://www.nature.com/articles/s41467-021-21330-0)
+
+
+## Optional Reading
+
+* [Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design](https://www.medrxiv.org/content/10.1101/2023.03.19.23287458)
+* [Can you teach old drugs new tricks?](https://www.nature.com/articles/534314a)  
+* [The potential of artificial intelligence to improve patient safety: a scoping review](https://www.nature.com/articles/s41746-021-00423-6)
+* [Population-scale identification of differential adverse events before and during a pandemic](https://www.nature.com/articles/s43588-021-00138-4) 
+* [Clinical biomarkers in drug discovery and development](https://www.nature.com/articles/nrd1130)
diff --git a/lectures/week14.md → lectures/week12.md b/lectures/week14.md → lectures/week12.md
@@ -1,13 +1,13 @@
 ---
 layout: page
-title: Week 14 - Ethical & Legal
-nav_order: 10
+title: Week 12 - Ethical & Legal
+nav_order: 9
 description: BMI 702 - Foundations in Biomedical Informatics II - Biomedical Artificial Intelligence
 ---
 
-# Week 14 - Ethical & Legal Considerations for Biomedical AI
+# Week 12 - Ethical & Legal Considerations for Biomedical AI
 
-## Required Reading (Week 14 Pre-Class Quiz)
+## Required Reading (Week 12 Pre-Class Quiz)
 
 * [Privacy in the age of medical big data](https://www.nature.com/articles/s41591-018-0272-7)
 * [Ethical and legal aspects of ambient intelligence in hospitals](https://jamanetwork.com/journals/jama/fullarticle/2759956)