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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    A Python toolbox for analysing body movements across space and time

    Python 116 12

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 1

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 15 3

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 25 3

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A package to manage electrophysiology analysis.

    Python 14

Repositories

Showing 10 of 58 repositories
  • movement Public

    A Python toolbox for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 116 BSD-3-Clause 12 96 13 Updated Feb 8, 2025
  • spikewrap Public

    A package to manage electrophysiology analysis.

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 14 BSD-3-Clause 0 13 0 Updated Feb 7, 2025
  • neuroinformatics-unit.github.io Public

    Home website of the Neuroinformatics Unit

    neuroinformatics-unit/neuroinformatics-unit.github.io’s past year of commit activity
    7 BSD-3-Clause 0 11 1 Updated Feb 7, 2025
  • datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    neuroinformatics-unit/datashuttle’s past year of commit activity
    Python 15 BSD-3-Clause 3 49 4 Updated Feb 7, 2025
  • ethology Public

    Data processing tools for animal behavioural analysis

    neuroinformatics-unit/ethology’s past year of commit activity
    Python 10 BSD-3-Clause 0 18 5 Updated Feb 6, 2025
  • actions Public

    Re-usable GitHub Action scripts

    neuroinformatics-unit/actions’s past year of commit activity
    10 MIT 3 6 0 Updated Feb 6, 2025
  • HowTo Public

    NIU website on common software problems and their troubleshooting

    neuroinformatics-unit/HowTo’s past year of commit activity
    10 CC-BY-4.0 1 12 1 Updated Feb 6, 2025
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    neuroinformatics-unit/derotation’s past year of commit activity
    Python 7 BSD-3-Clause 0 13 (1 issue needs help) 2 Updated Feb 4, 2025
  • fancylog Public

    Fancier logging with python.

    neuroinformatics-unit/fancylog’s past year of commit activity
    Python 12 BSD-3-Clause 4 5 0 Updated Feb 4, 2025
  • photon-mosaic Public

    Automate analysis and tracking of multiple calcium imaging datasets to compare parameters choices

    neuroinformatics-unit/photon-mosaic’s past year of commit activity
    Python 2 BSD-3-Clause 0 1 2 Updated Feb 4, 2025
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