Merge branch 'master' into fix-danger-config-docs

nextflow-io · Jan 8, 2024 · bcf4074 · bcf4074
2 parents fd40912 + 4727f17
commit bcf4074
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diff --git a/docs/config.md b/docs/config.md
@@ -1446,12 +1446,12 @@ The following settings are available:
 `singularity.ociAutoPull`
 : :::{versionadded} 23.12.0-edge
   :::
-: When enabled, OCI (and Docker) container images are pull and converted to a SIF image file format implicitly by the Singularity run command, instead of Nextflow. Requires Singulairty 3.11 or later (default: `false`).
+: When enabled, OCI (and Docker) container images are pull and converted to a SIF image file format implicitly by the Singularity run command, instead of Nextflow. Requires Singularity 3.11 or later (default: `false`).
 
 `singularity.ociMode`
 : :::{versionadded} 23.12.0-edge
   :::
-: Enable OCI-mode, that allows running native OCI compliant container image with Singularity using `crun` or `runc` as low-level runtime. Note: it requires Singulairty 4 or later. See `--oci` flag in the [Singularity documentation](https://docs.sylabs.io/guides/4.0/user-guide/oci_runtime.html#oci-mode) for more details and requirements (default: `false`).
+: Enable OCI-mode, that allows running native OCI compliant container image with Singularity using `crun` or `runc` as low-level runtime. Note: it requires Singularity 4 or later. See `--oci` flag in the [Singularity documentation](https://docs.sylabs.io/guides/4.0/user-guide/oci_runtime.html#oci-mode) for more details and requirements (default: `false`).
 
 `singularity.pullTimeout`
 : The amount of time the Singularity pull can last, exceeding which the process is terminated (default: `20 min`).

diff --git a/docs/executor.md b/docs/executor.md
@@ -270,7 +270,7 @@ Nextflow manages each process as a separate job that is submitted to the cluster
 
 The pipeline must be launched from a node where the `hq` command is available, which is typically the cluster login node.
 
-To enable the HTCondor executor, set `process.executor = 'hyperqueue'` in the `nextflow.config` file.
+To enable the HyperQueue executor, set `process.executor = 'hq'` in the `nextflow.config` file.
 
 Resource requests and other job characteristics can be controlled via the following process directives:
 

diff --git a/modules/nextflow/src/main/groovy/nextflow/container/ContainerConfig.groovy b/modules/nextflow/src/main/groovy/nextflow/container/ContainerConfig.groovy
@@ -84,7 +84,7 @@ class ContainerConfig extends LinkedHashMap {
             return false
         }
         if( get('oci')?.toString()=='true' ) {
-            log.warn "The setting `singularity.oci` is deprecated - use `singularity.ociNative` instead"
+            log.warn "The setting `singularity.oci` is deprecated - use `singularity.ociMode` instead"
             return true
         }
         if( get('ociMode')?.toString()=='true' )