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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 267 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 162

Repositories

Showing 10 of 94 repositories
  • forecasts-ncov Public

    SARS-CoV-2 variant growth rates and frequency forecasts

    nextstrain/forecasts-ncov’s past year of commit activity
    Python 7 2 11 4 Updated Feb 3, 2025
  • forecasts-viz Public
    nextstrain/forecasts-viz’s past year of commit activity
    JavaScript 1 0 2 1 Updated Feb 3, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 93 AGPL-3.0 49 69 9 Updated Feb 3, 2025
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 296 AGPL-3.0 162 232 (4 issues need help) 29 Updated Feb 3, 2025
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 3 0 6 2 Updated Feb 2, 2025
  • rubella Public
    nextstrain/rubella’s past year of commit activity
    Python 0 1 2 1 Updated Feb 1, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 267 AGPL-3.0 128 220 (1 issue needs help) 33 Updated Feb 1, 2025
  • nipah Public
    nextstrain/nipah’s past year of commit activity
    Python 0 0 2 0 Updated Feb 1, 2025
  • ebola Public

    Nextstrain build for Ebola virus

    nextstrain/ebola’s past year of commit activity
    Python 3 9 1 1 Updated Feb 1, 2025
  • nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    nextstrain/nextclade’s past year of commit activity
    Rust 224 MIT 60 112 (32 issues need help) 20 Updated Jan 31, 2025
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