add minimap

nf-core · Dec 19, 2024 · 0ea316e · 0ea316e
1 parent 34109cd
commit 0ea316e
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Showing 4 changed files with 4 additions and 1 deletion.
diff --git a/modules/local/starfusion/build/environment.yml b/modules/local/starfusion/build/environment.yml
@@ -4,4 +4,5 @@ channels:
 dependencies:
   - bioconda::dfam=3.7
   - bioconda::hmmer=3.4
+  - bioconda::minimap2=2.28
   - bioconda::star-fusion=1.14.0
diff --git a/modules/local/starfusion/build/main.nf b/modules/local/starfusion/build/main.nf
@@ -3,7 +3,7 @@ process STARFUSION_BUILD {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f7/f7977acd75883433483258a1cc21d069a64947af431b26c3fc13c6be62666dfa/data' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/be/bed86145102fdf7e381e1a506a4723676f98b4bbe1db5085d02213cef18525c9/data' :
         'community.wave.seqera.io/library/dfam_hmmer_star-fusion:e8fe96707386872f'}"
 
     input:

diff --git a/modules/local/starfusion/detect/environment.yml b/modules/local/starfusion/detect/environment.yml
@@ -4,4 +4,5 @@ channels:
 dependencies:
   - bioconda::dfam=3.7
   - bioconda::hmmer=3.4
+  - bioconda::minimap2=2.28
   - bioconda::star-fusion=1.14.0
diff --git a/modules/local/starfusion/download/environment.yml b/modules/local/starfusion/download/environment.yml
@@ -4,4 +4,5 @@ channels:
 dependencies:
   - bioconda::dfam=3.7
   - bioconda::hmmer=3.4
+  - bioconda::minimap2=2.28
   - bioconda::star-fusion=1.14.0