add missing conda lines

nf-core · Dec 3, 2024 · 474a89e · 474a89e
1 parent 4c68f9a
commit 474a89e
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diff --git a/modules/local/fusioninspector/main.nf b/modules/local/fusioninspector/main.nf
@@ -2,6 +2,7 @@ process FUSIONINSPECTOR {
     tag "$meta.id"
     label 'process_high'
 
+    conda "${moduleDir}/environment.yml"
     container 'community.wave.seqera.io/library/dfam_hmmer_samtools_star-fusion_pruned:5694d82381bf039e'
 
     input:

diff --git a/modules/local/starfusion/build/main.nf b/modules/local/starfusion/build/main.nf
@@ -1,6 +1,7 @@
 process STARFUSION_BUILD {
     tag 'star-fusion'
 
+    conda "${moduleDir}/environment.yml"
     container 'community.wave.seqera.io/library/dfam_hmmer_samtools_star-fusion_pruned:5694d82381bf039e'
 
     input:

diff --git a/modules/local/starfusion/detect/main.nf b/modules/local/starfusion/detect/main.nf
@@ -2,6 +2,7 @@ process STARFUSION {
     tag "$meta.id"
     label 'process_high'
 
+    conda "${moduleDir}/environment.yml"
     container 'community.wave.seqera.io/library/dfam_hmmer_samtools_star-fusion_pruned:5694d82381bf039e'
 
     input:

diff --git a/modules/local/starfusion/download/main.nf b/modules/local/starfusion/download/main.nf
@@ -1,6 +1,7 @@
 process STARFUSION_DOWNLOAD {
     tag 'star-fusion'
 
+    conda "${moduleDir}/environment.yml"
     container 'community.wave.seqera.io/library/dfam_hmmer_samtools_star-fusion_pruned:5694d82381bf039e'
 
     output: