remove fusiongdb

nf-core · Oct 10, 2024 · 5073208 · 5073208
1 parent fce681c
commit 5073208
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 2 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -22,6 +22,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Removed
 
+- Remove fusionGDB from documentation and fusion-report download stubs
+
 ## v3.0.2 - [2024-04-10]
 
 ### Added

diff --git a/docs/usage.md b/docs/usage.md
@@ -98,7 +98,7 @@ process {
 }
 ```
 
-The four `fusion-report` files: `cosmic.db`, `fusiongdb.db`, `fusiongdb2.db`, `mitelman.db`
+The four `fusion-report` files: `cosmic.db`, `fusiongdb2.db`, `mitelman.db`
 should then be copied into the HPC `<REFERENCE_PATH>/references/fusion_report_db`.
 
 #### Note about fusioncatcher references

diff --git a/modules/local/fusionreport/download/main.nf b/modules/local/fusionreport/download/main.nf
@@ -28,7 +28,6 @@ process FUSIONREPORT_DOWNLOAD {
     """
     touch cosmic.db
     touch fusiongdb2.db
-    touch fusiongdb.db
     touch mitelman.db
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":