test to see if dependencies are working with starfusion1.14 onluy

nf-core · Dec 17, 2024 · b7383eb · b7383eb
1 parent ff69a60
commit b7383eb
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Showing 4 changed files with 12 additions and 4 deletions.
diff --git a/modules/local/fusioninspector/main.nf b/modules/local/fusioninspector/main.nf
@@ -3,7 +3,9 @@ process FUSIONINSPECTOR {
     label 'process_high'
 
     conda "${moduleDir}/environment.yml"
-    container 'trinityctat/fusioninspector:2.10.0'
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data':
+        'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}"
 
     input:
     tuple val(meta), path(reads), path(fusion_list)

diff --git a/modules/local/starfusion/build/main.nf b/modules/local/starfusion/build/main.nf
@@ -2,7 +2,9 @@ process STARFUSION_BUILD {
     tag 'star-fusion'
 
     conda "${moduleDir}/environment.yml"
-    container 'docker.io/trinityctat/starfusion:1.14.0'
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data':
+        'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/local/starfusion/detect/main.nf b/modules/local/starfusion/detect/main.nf
@@ -3,7 +3,9 @@ process STARFUSION {
     label 'process_high'
 
     conda "${moduleDir}/environment.yml"
-    container 'docker.io/trinityctat/starfusion:1.14.0'
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data':
+        'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}"
 
     input:
     tuple val(meta), path(reads), path(junction)

diff --git a/modules/local/starfusion/download/main.nf b/modules/local/starfusion/download/main.nf
@@ -2,7 +2,9 @@ process STARFUSION_DOWNLOAD {
     tag 'star-fusion'
 
     conda "${moduleDir}/environment.yml"
-    container 'docker.io/trinityctat/starfusion:1.14.0'
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data':
+        'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}"
 
     output:
     path "ctat_genome_lib_build_dir/*"            , emit: reference