Code

New module ctat splicing#587

Code

Merged

nvnieuwk merged 23 commits intodevnf-core/rnafusion:devfrom new-module-ctat-splicingnf-core/rnafusion:new-module-ctat-splicingCopy head branch name to clipboardDec 20, 2024

+536-51

Commits

Commits on Dec 17, 2024

• fix test config resources

  nvnieuwk

  committed
  dbb45c9

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• add ctatsplicing module

  nvnieuwk

  committed
  4245c54

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• implement ctatsplicing

  nvnieuwk

  committed
  f025945

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• fix pre-commit

  nvnieuwk

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  3268a45

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• Update nextflow.config

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  nvnieuwk

  and

  rannick

  authored
  a84033b

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• update changelog

  nvnieuwk

  committed
  4247b12

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• Merge branch 'new-module-ctat-splicing' of github.com:nf-core/rnafusion into new-module-ctat-splicing

  nvnieuwk

  committed
  af80d58

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• make ctatsplicing possible with arriba input

  nvnieuwk

  committed
  0db19d9

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Commits on Dec 19, 2024

• add some views to debug the full run

  nvnieuwk

  committed
  350de1b

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• try to fix issue with arriba output

  nvnieuwk

  committed
  b8bae77

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• remove views

  nvnieuwk

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• remove breaking ifEmpties

  nvnieuwk

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  05e0e61

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• remove def

  nvnieuwk

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  62fdf33

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• redo star changes

  nvnieuwk

  committed
  8155168

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• use bam from starfusion

  nvnieuwk

  committed
  e386c81

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• create junctions with arriba for ctatsplicing

  nvnieuwk

  committed
  62ee76f

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• do not create an index in ctat splicing

  nvnieuwk

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Commits on Dec 20, 2024

• readd indexing to ctat & sort arriba bam

  nvnieuwk

  committed
  9dc352f

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• Merge branch 'dev' into new-module-ctat-splicing

  nvnieuwk

  authored
  45e4879

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• remove ctatsplicing check from starfusion

  nvnieuwk

  committed
  9ea1f3b

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• clarify changelog

  nvnieuwk

  committed
  1c98fc7

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• update docs

  nvnieuwk

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  74d4534

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• prettyyy

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