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36 Open 90 Closed
36 Open 90 Closed
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Issues list

Apply typing/tagging for non-data as well in project setup
#216 opened Mar 5, 2025 by anngvu
2 tasks
@anngvu
add_to_collection fails in case where collection is empty
#215 opened Mar 5, 2025 by anngvu
@anngvu
Function for rollback of table version
#195 opened Oct 16, 2024 by anngvu
surface addAnnotationColumns in new_dataset
#179 opened Jun 28, 2024 by allaway
1
Phase C of synapse refactor
#175 opened Mar 4, 2024 by anngvu
Phase B of synapser refactor
#174 opened Mar 4, 2024 by anngvu
@anngvu
Update package to run with updated version of reticulate
#165 opened Dec 21, 2023 by jaybee84
Add valid values for data_type in manifest_generate() function
#159 opened Dec 9, 2023 by jaybee84
@allaway
Project/template enhancements
#155 opened Nov 1, 2023 by anngvu
2 tasks
@anngvu
Could add OR logic for fastq.gz
#137 opened Oct 12, 2023 by allaway
metadata is a resourceType
#136 opened Oct 12, 2023 by allaway
fq.gz is not always geneExpression
#135 opened Oct 12, 2023 by allaway
1
Handle potential study schema update for annotationStatus
#130 opened Sep 27, 2023 by anngvu
Follow-up meta-qc enhancements
#126 opened Sep 5, 2023 by anngvu
Util to create normalized clinical data
#125 opened Aug 30, 2023 by anngvu
Add script for more sophisticated scoring of annotations
#122 opened Aug 28, 2023 by anngvu
Add iterative submission to handle Synapse platform API limits when using annotate_with_manifest with large manifests
#117 opened Aug 18, 2023 by anngvu
nfportalutils not utilizing .synapseConfig
#111 opened Jul 19, 2023 by allaway
Refactor synapse-adjacent functions to use new reticulate-based synapser
#94 opened Mar 24, 2023 by allaway
3
@anngvu
3
Add function to flag similar strings
#75 opened Oct 21, 2022 by allaway
3
function to create standardized nf-osi data processing folders enhancement New feature or request
#60 opened Sep 2, 2022 by allaway
@jaybee84
1
add_activity_batch fails with missing link bug Something isn't working
#55 opened Jul 27, 2022 by allaway
Alternate implementation of "inheriting" annotations using a table enhancement New feature or request
#52 opened Jul 1, 2022 by anngvu
add_publication functions ignores consortium authors bug Something isn't working
#47 opened Jun 27, 2022 by allaway
Convert gists and other example scripts to package vignettes enhancement New feature or request
#45 opened Jun 21, 2022 by anngvu
@anngvu
1
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