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Fixed broken links and /newline issues #13

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I opted to fix the links by adding ../ instead of removing md/. This is because I figured for maintainability, it's much easier to do a find/replace on "../md than it is on ".

I also got rid of a few extraneous bullets and fixed some newline issues which arose because the trailing > on the Markdown HTML needs a blank newline or else it causes the subsequent character to get garbled.

I opted to fix the links by adding `../` instead of removing `md/`. This is because I figured for maintainability, it's much easier to do a find/replace on `"../md` than it is on `"`.

I also got rid of a few extraneous bullets and fixed some newline issues which arose because the trailing `>` on the Markdown HTML needs a blank newline or else it causes the subsequent character to get garbled.
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Hmm, on second thought, this file might not be intended to be rendered from within the source code tree. I hadn't seen it in the server's walkthrough, but now I do and I wonder if this PR is misplaced.

If so, it might make sense to have a top-level file in https://github.com/norandomtechie/ece270-simulator/tree/master/md which explains how to view the contents directory. Maybe it's just enough to say something like "these *.md files will look broken if viewed from within Github, but instead go to www.foo.bar and they will render correctly.

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