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[MODIF] prettier
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@nservant
nservant committed Jan 26, 2024
1 parent d5d8d27 commit 0ee6837
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Showing 2 changed files with 27 additions and 75 deletions.
98 changes: 25 additions & 73 deletions modules.json
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Expand Up @@ -8,170 +8,122 @@
"bowtie2/align": {
"branch": "master",
"git_sha": "3c77ca9aac783e76c3614a06db3bfe4fef619bde",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "1fea64f5132a813ec97c1c6d3a74e0aee7142b6d",
"installed_by": [
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]
"installed_by": ["modules"]
},
"bwa/index": {
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"installed_by": [
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]
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},
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},
"calder2": {
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"cooler/balance": {
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]
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},
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"cooler/dump": {
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"cooler/makebins": {
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"custom/dumpsoftwareversions": {
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"custom/getchromsizes": {
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"fastqc": {
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"git_sha": "c9488585ce7bd35ccd2a30faa2371454c8112fb9",
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"pairix": {
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"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
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]
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},
"pairtools/dedup": {
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"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": [
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]
"installed_by": ["modules"]
},
"pairtools/merge": {
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"installed_by": ["modules"]
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"pairtools/parse": {
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"pairtools/restrict": {
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"pairtools/select": {
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"pairtools/sort": {
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"pairtools/stats": {
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"samtools/flagstat": {
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"samtools/sort": {
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"installed_by": ["modules"]
}
}
},
Expand All @@ -180,4 +132,4 @@
}
}
}
}
}
4 changes: 2 additions & 2 deletions nextflow_schema.json
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Expand Up @@ -288,11 +288,11 @@
"default": 100,
"description": "Maximum number of iteraction for HiC-Pro ICE normalization"
},
"balancing_opts": {
"balancing_opts": {
"type": "string",
"description": "Update 'cooler balance' options",
"default": "--force"
},
},
"res_zoomify": {
"type": "string",
"default": "5000",
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