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Add new chemical role terms
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The purpose of this PR is to add new CHEBI chemical role terms to improve the grouping and hierarchy of composite trait terms.
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@rays22
rays22 committed Jan 28, 2025
1 parent c5289db commit 652feb6
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7 changes: 7 additions & 0 deletions src/patterns/data/default/response_to_chemical_with_role_stimulus.tsv
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Expand Up @@ -36,3 +36,10 @@ OBA:2050352 CHEBI:35526 hypoglycemic agent https://orcid.org/0000-0001-6757-474
OBA:2045453 attribute of response to allergen CHEBI:50904 allergen https://orcid.org/0000-0001-8314-2140
OBA:2045454 attribute of response to thyroid hormone CHEBI:60311 thyroid hormone https://orcid.org/0000-0001-8314-2140
OBA:2050354 CHEBI:35842 antirheumatic drug https://orcid.org/0000-0001-6757-4744
OBA:2045551 response to non-narcotic analgesic characteristics CHEBI:35481 non-narcotic analgesic https://orcid.org/0000-0001-8314-2140
OBA:2045552 response to antipyretic characteristics CHEBI:35493 antipyretic https://orcid.org/0000-0001-8314-2140
OBA:2045553 prostaglandin synthetase inhibitor response characteristics CHEBI:35544 EC 1.14.99.1 (prostaglandin-endoperoxide synthase) inhibitor https://orcid.org/0000-0001-8314-2140
OBA:2045554 response to xenobiotic characteristics CHEBI:35703 xenobiotic https://orcid.org/0000-0001-8314-2140
OBA:2045555 response to antibacterial drug characteristics CHEBI:36047 antibacterial drug https://orcid.org/0000-0001-8314-2140
OBA:2045556 response to protein synthesis inhibitor characteristics CHEBI:48001 protein synthesis inhibitor https://orcid.org/0000-0001-8314-2140
OBA:2045557 response to environmental contaminant characteristics CHEBI:78298 environmental contaminant https://orcid.org/0000-0001-8314-2140
74 changes: 72 additions & 2 deletions src/patterns/definitions.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/oba/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/oba/releases/2025-01-14/patterns/definitions.owl>
Annotation(owl:versionInfo "2025-01-14")
<http://purl.obolibrary.org/obo/oba/releases/2025-01-28/patterns/definitions.owl>
Annotation(owl:versionInfo "2025-01-28")

Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10033>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10112>))
Expand Down Expand Up @@ -263,21 +263,26 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35457>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35469>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35475>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35476>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35481>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35493>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35498>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35523>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35526>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35530>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35544>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35581>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35610>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35623>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35666>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35703>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35704>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35705>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35766>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35780>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_35842>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_36009>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_36044>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_36047>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_36064>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_36080>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_36477>))
Expand Down Expand Up @@ -322,6 +327,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_47381>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_47773>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_47774>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_47775>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_48001>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_4911>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_49200>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_49603>))
Expand Down Expand Up @@ -442,6 +448,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_77096>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_77292>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_7735>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_7824>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_78298>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_8028>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_80549>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_80630>))
Expand Down Expand Up @@ -12247,6 +12254,13 @@ Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045457>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045458>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045459>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045460>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045551>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045552>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045553>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045554>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045555>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045556>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045557>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050001>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050002>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050003>))
Expand Down Expand Up @@ -109398,6 +109412,62 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045460> "body extent")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045460> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001708> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0000468>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045551> (response to non-narcotic analgesic characteristics)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045551> "A trait that affects the response to a stimulus with non-narcotic analgesic.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045551> "https://orcid.org/0000-0001-8314-2140")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045551> "response to non-narcotic analgesic trait")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045551> "response to non-narcotic analgesic characteristics")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045551> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001236> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0050896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_35481>)))))))

# Class: <http://purl.obolibrary.org/obo/OBA_2045552> (response to antipyretic characteristics)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045552> "A trait that affects the response to a stimulus with antipyretic.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045552> "https://orcid.org/0000-0001-8314-2140")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045552> "response to antipyretic trait")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045552> "response to antipyretic characteristics")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045552> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001236> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0050896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_35493>)))))))

# Class: <http://purl.obolibrary.org/obo/OBA_2045553> (prostaglandin synthetase inhibitor response characteristics)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045553> "A trait that affects the response to a stimulus with EC 1.14.99.1 (prostaglandin-endoperoxide synthase) inhibitor.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045553> "https://orcid.org/0000-0001-8314-2140")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045553> "response to EC 1.14.99.1 (prostaglandin-endoperoxide synthase) inhibitor trait")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045553> "prostaglandin synthetase inhibitor response characteristics")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045553> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001236> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0050896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_35544>)))))))

# Class: <http://purl.obolibrary.org/obo/OBA_2045554> (response to xenobiotic characteristics)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045554> "A trait that affects the response to a stimulus with xenobiotic.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045554> "https://orcid.org/0000-0001-8314-2140")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045554> "response to xenobiotic trait")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045554> "response to xenobiotic characteristics")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045554> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001236> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0050896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_35703>)))))))

# Class: <http://purl.obolibrary.org/obo/OBA_2045555> (response to antibacterial drug characteristics)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045555> "A trait that affects the response to a stimulus with antibacterial drug.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045555> "https://orcid.org/0000-0001-8314-2140")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045555> "response to antibacterial drug trait")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045555> "response to antibacterial drug characteristics")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045555> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001236> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0050896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_36047>)))))))

# Class: <http://purl.obolibrary.org/obo/OBA_2045556> (response to protein synthesis inhibitor characteristics)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045556> "A trait that affects the response to a stimulus with protein synthesis inhibitor.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045556> "https://orcid.org/0000-0001-8314-2140")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045556> "response to protein synthesis inhibitor trait")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045556> "response to protein synthesis inhibitor characteristics")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045556> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001236> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0050896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_48001>)))))))

# Class: <http://purl.obolibrary.org/obo/OBA_2045557> (response to environmental contaminant characteristics)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045557> "A trait that affects the response to a stimulus with environmental contaminant.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045557> "https://orcid.org/0000-0001-8314-2140")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045557> "response to environmental contaminant trait")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045557> "response to environmental contaminant characteristics")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045557> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001236> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0050896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_78298>)))))))

# Class: <http://purl.obolibrary.org/obo/OBA_2050001> (ascending aorta diameter)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2050001> "The diameter of a ascending aorta.")
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