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Add new term "amount of iron in brain" #358

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Feb 24, 2025
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Add new term "amount of iron in brain" #358

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6bf0263
Add new term "amount of iron in brain"
rays22 Feb 24, 2025
68e2ee7
Update dosdp patterns file
rays22 Feb 24, 2025
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1 change: 1 addition & 0 deletions src/patterns/data/default/entity_attribute_location.tsv
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Expand Up @@ -8053,3 +8053,4 @@ OBA:2052958 PR:O75356 PATO:0000070 amount UBERON:0000178 blood PMID:3841286
OBA:2052959 PR:P51531 PATO:0000070 amount UBERON:0000178 blood PMID:38412862 https://orcid.org/0000-0001-6757-4744
OBA:2052960 PR:P00441 PATO:0000070 amount UBERON:0000178 blood PMID:38412862 https://orcid.org/0000-0001-6757-4744
OBA:VT0005007 bone mineral amount CHEBI:46662 mineral PATO:0000070 amount UBERON:0001474 bone element bone mineral mass https://orcid.org/0000-0001-8314-2140
OBA:2045560 amount of iron in brain CHEBI:18248 iron atom PATO:0000070 amount UBERON:0000955 brain brain iron amount PMID:38789058 https://orcid.org/0000-0001-8314-2140
15 changes: 13 additions & 2 deletions src/patterns/definitions.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/oba/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/oba/releases/2025-02-12/patterns/definitions.owl>
Annotation(owl:versionInfo "2025-02-12")
<http://purl.obolibrary.org/obo/oba/releases/2025-02-24/patterns/definitions.owl>
Annotation(owl:versionInfo "2025-02-24")

Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10033>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10112>))
Expand Down Expand Up @@ -12263,6 +12263,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045556>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045557>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045558>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045559>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2045560>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050001>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050002>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050003>))
Expand Down Expand Up @@ -109487,6 +109488,16 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045559> "bone density")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045559> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001474>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045560> (amount of iron in brain)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute_location") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045560> "The amount of a iron atom when measured in brain.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045560> "https://orcid.org/0000-0001-8314-2140")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/OBA_2045560> "PMID:38789058")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045560> "brain iron amount")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute_location") <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045560> "brain iron atom amount")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045560> "amount of iron in brain")
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045560> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_18248> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000955>)))))

# Class: <http://purl.obolibrary.org/obo/OBA_2050001> (ascending aorta diameter)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2050001> "The diameter of a ascending aorta.")
Expand Down