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fix viash test bugs #206

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merged 5 commits into from
Jul 24, 2023
Merged

fix viash test bugs #206

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60fa337
fix dim_red tsne
KaiWaldrant Jul 19, 2023
c52a86c
disable seurat_transferdata
KaiWaldrant Jul 20, 2023
e9a6b0c
update changelog
KaiWaldrant Jul 20, 2023
6a1139b
Update CHANGELOG.md
KaiWaldrant Jul 24, 2023
bc76571
Merge branch 'main' into fix/viash-test-bugs
KaiWaldrant Jul 24, 2023
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5 changes: 5 additions & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -20,8 +20,13 @@

### BUG FIXES

* `dimensionality_reduction/methods/tsne`: Use GitHub version of MulticoreTSNE.

* `label_projection/methods/seurat_transferdata`: Temporarily disable component as it appears to not be working (PR #206).

* Remove the ns-list action for workflows in integration test (PR #208)


## common

### NEW FUNCTIONALITY
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4 changes: 2 additions & 2 deletions src/tasks/dimensionality_reduction/methods/tsne/config.vsh.yaml
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Expand Up @@ -42,8 +42,8 @@ platforms:
- cmake
- gcc
- type: python
packages:
- MulticoreTSNE
github:
- DmitryUlyanov/Multicore-TSNE
- type: nextflow
directives:
label: [ highmem, highcpu ]
1 change: 1 addition & 0 deletions src/tasks/label_projection/methods/seurat_transferdata/config.vsh.yaml
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@@ -1,5 +1,6 @@
__merge__: ../../api/comp_method.yaml
functionality:
status: disabled
name: "seurat_transferdata"
info:
label: Seurat TransferData
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