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* FIX: fix bash call, use jammy (22.04), use erad2024 docker endpoint * FIX: try to build image on pullrequest * WIP: refer to own workflows * WIP: add baltrad build deps * WIP: use 2024.03.0 repo2docker * WIP: hardcode python3.11 for baltrad install scripts * WIP: use openradar fork of baltrad hlhdf * WIP: do not build baltrad for now * WIP: do not build baltrad for now * WIP: use correct repo2docker version * WIP: add environment.ipynb, remove nbstripout.sh call * WIP: add environment.ipynb, remove nbstripout.sh call * WIP: fix workflows * WIP: use auto instead of cache/binder
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,81 @@ | ||
| name: build-book-pullrequest | ||
|
|
||
| on: | ||
| workflow_call: | ||
| inputs: | ||
| environment_name: | ||
| description: 'Name of conda environment to activate' | ||
| required: false | ||
| default: 'cookbook-dev' | ||
| type: string | ||
| environment_file: | ||
| description: 'Name of conda environment file' | ||
| required: false | ||
| default: 'environment.yml' | ||
| type: string | ||
| path_to_notebooks: | ||
| description: 'Location of the JupyterBook source relative to repo root' | ||
| required: false | ||
| default: './' | ||
| type: string | ||
| use_cached_environment: | ||
| description: 'Flag for whether we should attempt to retrieve a previously cached environment.' | ||
| required: false | ||
| default: 'true' | ||
| type: string # had a lot of trouble with boolean types, see https://github.com/actions/runner/issues/1483 | ||
|
|
||
| jobs: | ||
| build-book: | ||
| runs-on: ubuntu-latest | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| steps: | ||
| - name: checkout files in repo | ||
| uses: actions/checkout@v3 | ||
| - name: remove Dockerfile | ||
| run: | | ||
| rm binder/Dockerfile | ||
| - name: update jupyter dependencies with repo2docker | ||
| uses: jupyterhub/repo2docker-action@master | ||
| with: | ||
| NO_PUSH: true | ||
| DOCKER_USERNAME: "openradar" | ||
| DOCKER_PASSWORD: ${{ secrets.GITHUB_TOKEN }} | ||
| DOCKER_REGISTRY: "ghcr.io" | ||
| PUBLIC_REGISTRY_CHECK: true | ||
| APPENDIX_FILE: "binder/appendix.txt" | ||
| REPO2DOCKER_EXTRA_ARGS: --Repo2Docker.base_image=docker.io/library/buildpack-deps:jammy | ||
| FORCE_REPO2DOCKER_VERSION: jupyter-repo2docker==2024.03.0 | ||
|
|
||
| - name: list docker images | ||
| run: | | ||
| docker image ls -a | ||
| - name: Build the book | ||
| uses: addnab/docker-run-action@v3 | ||
| with: | ||
| image: ghcr.io/openradar/erad2024:latest | ||
| options: --user root -v ${{ github.workspace }}:/work | ||
| shell: bash -l {0} | ||
| run: | | ||
| # copy baltrad notebooks to book dir | ||
| # re add when baltrad issues are sorted out | ||
| # cp -rp /home/jovyan/notebooks/baltrad* /work/notebooks/. | ||
| # cp -rp /home/jovyan/notebooks/pyart2baltrad* /work/notebooks/. | ||
| # /work/install/nbstripout_notebooks.sh | ||
| source /srv/conda/etc/profile.d/conda.sh | ||
| conda activate notebook | ||
| jupyter-book build /work/${{ inputs.path_to_notebooks }} | ||
| - name: Zip the book | ||
| run: | | ||
| set -x | ||
| set -e | ||
| if [ -f book.zip ]; then | ||
| rm -rf book.zip | ||
| fi | ||
| zip -r book.zip ${{ inputs.path_to_notebooks }}/_build/html | ||
| - name: Upload zipped book artifact | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: book-zip-${{github.event.number}} | ||
| path: ./book.zip |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,3 @@ | ||
| FROM ghcr.io/openradar/erad2022:latest | ||
| FROM ghcr.io/openradar/erad2024:latest | ||
|
|
||
| RUN mamba env update -f binder/environment.yml |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,63 @@ | ||
| { | ||
| "cells": [ | ||
| { | ||
| "cell_type": "markdown", | ||
| "metadata": {}, | ||
| "source": [ | ||
| "# Environment overview" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "!env" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "!conda list" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "import wradlib as wrl" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "wrl.show_versions()" | ||
| ] | ||
| } | ||
| ], | ||
| "metadata": { | ||
| "language_info": { | ||
| "codemirror_mode": { | ||
| "name": "ipython", | ||
| "version": 3 | ||
| }, | ||
| "file_extension": ".py", | ||
| "mimetype": "text/x-python", | ||
| "name": "python", | ||
| "nbconvert_exporter": "python", | ||
| "pygments_lexer": "ipython3", | ||
| "version": "3.10.5" | ||
| } | ||
| }, | ||
| "nbformat": 4, | ||
| "nbformat_minor": 4 | ||
| } |