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@MIDA-group Methods for Image Data Analysis - MIDA

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    19 repositories

    • dzi_assemble

      Public
      Python script for assembling dzi tiles into full images using pyvips arrayjoin
      Python
      •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • MultiRegEval

      Public
      Evaluation Framework for Multimodal Biomedical Image Registration Methods
      Python
      •
      MIT License
      •4•33•0•0•Updated Jan 30, 2025Jan 30, 2025

    • LetItShine

      Public
      Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection —— Computers in Biology and Medicine
      medical-image-classificationoral-cancermultimodal-information-fusion
      Python
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • OralCancerMILvsSIL

      Public
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Jan 13, 2025Jan 13, 2025

    • CytoBrowser

      Public
      CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.
      visualizationnodejsjavascriptmachine-learningdeep-learningwebappnode-jswhole-slide-imagingwsicytology
      JavaScript
      •
      GNU General Public License v3.0
      •8•17•87•0•Updated Jan 11, 2025Jan 11, 2025

    • CoMIR

      Public
      Framework for joint representation learning, evaluation through multimodal registration and comparison with image translation based approaches
      Jupyter Notebook
      •
      Other
      •11•74•5•0•Updated Nov 18, 2024Nov 18, 2024

    • occ_cyto

      Public
      Sparse key instance detection on PKGBM dataset
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

    • globalign

      Public
      Fast global mutual information-based rigid alignment in the Fourier domain
      Python
      •
      MIT License
      •4•29•2•0•Updated Aug 3, 2024Aug 3, 2024

    • CMIF

      Public
      Fast computation of cross-mutual information function (CMIF) in the frequency domain
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Nov 19, 2023Nov 19, 2023

    • .github

      Public
      0•0•0•0•Updated Nov 9, 2023Nov 9, 2023

    • SampledABMIL

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Jul 14, 2023Jul 14, 2023

    • CoMIR_INSPIRE

      Public
      Framework for Multimodal Deformable Image Registration. Coordinated equivariant representation learning (CoMIR) combined with robust deformable registration by INSPIRE.
      representation-learningimage-registrationmultimodal-deep-learning
      Python
      •1•8•0•0•Updated Mar 7, 2023Mar 7, 2023

    • CrossModal_ImgRetrieval

      Public
      Cross-Modality Sub-Image Retrieval using Contrastive Multimodal Image Representations
      MATLAB
      •
      MIT License
      •1•7•0•0•Updated Oct 10, 2022Oct 10, 2022

    • OralScreen

      Public
      Code of paper "A Deep Learning based Pipeline for Efficient Oral Cancer Screening on Whole Slide Images"
      Python
      •
      Other
      •5•10•0•0•Updated Nov 26, 2021Nov 26, 2021

    • cross_sim_ngf

      Public
      Global alignment of volumes with cross similarity of normalized gradient fields
      Python
      •0•2•0•0•Updated Oct 19, 2021Oct 19, 2021

    • itkAlphaAMD

      Public
      Registration framework based on alpha-amd distance and ITK.
      C++
      •
      MIT License
      •1•1•1•0•Updated Sep 19, 2021Sep 19, 2021

    • inspire

      Public
      INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration
      C++
      •
      MIT License
      •0•11•0•0•Updated Jun 30, 2021Jun 30, 2021

    • py_alpha_amd_release

      Public
      Py-Alpha-AMD Registration Framework - Robust Image Registration - Public Release
      Python
      •
      MIT License
      •8•20•1•1•Updated Jul 4, 2019Jul 4, 2019

    • sdt

      Public
      Stochastic Distance Transform - Python/NumPy/SciPy implementation.
      Python
      •
      MIT License
      •1•4•0•0•Updated Feb 14, 2019Feb 14, 2019