Skip to content

@Maths-against-Malaria MathMalaria

Change the repository type filter

All

    Repositories list

    9 repositories

    • generalModel

      Public
      Scripts of the general implementation of the maximum likelihood method to estimate haplotype frequencies and MOI from molecular data.
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • MOI-Bias-correction

      Public
      Repository of R functions used to derive results for the paper: "Bias-corrected maximum-likelihood estimation of multiplicity of infection and lineage frequencies".
      R
      •0•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • MultiAllelicBiLociModel

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 28, 2023Aug 28, 2023

    • Ebola

      Public
      Predicting the combined effects of case isolation, safe funeral practices, and contact tracing during Ebola virus disease outbreaks
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 24, 2022Dec 24, 2022

    • MultipleExposuresCOVID19

      Public
      Code for
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 22, 2022Dec 22, 2022

    • COVID19_Spatial_Model

      Public
      This repository contains the implementation of the model described in the paper "Predicting the impact of COVID-19 vaccination campaigns - a flexible age-dependent spatially-stratified predictive model, accounting for multiple viral variants and vaccines".
      Julia
      •
      MIT License
      •2•4•0•0•Updated Oct 20, 2022Oct 20, 2022

    • MultiLociBiallelicModel

      Public
      This repository contains the scripts of the model described in the manuscript 'A maximum-likelihood method to estimate haplotype frequencies and prevalence alongside multiplicity of infection from SNP data'.
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 4, 2022Aug 4, 2022

    • COVID19_ADE_Model

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2021Apr 1, 2021

    • COVID19_LTCFs

      Public
      Model used for the simulations in the paper ``Preventing COVID-19 spread in closed facilities by regular testing of employees – an efficient intervention in long-term care facilities and prisons?´´. doi: https://doi.org/10.1101/2020.10.12.20211573
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 24, 2021Mar 24, 2021