Repositories list

• agora-data-tools

  Public
  A place for Agora's ETL and Data Testing

  Jupyter Notebook

  •

  Apache License 2.0

  •3•1•0•0•Updated Feb 7, 2025Feb 7, 2025

• snowflake

  Public
  Snowflake Administration, Transformations, and Analytics

  snowflake

  Python

  •

  Apache License 2.0

  •4•5•0•5•Updated Feb 7, 2025Feb 7, 2025

• SynapseWebClient

  Public
  The web client of the Synapse REST service core

  JavaScript

  •

  Apache License 2.0

  •40•23•1•7•Updated Feb 7, 2025Feb 7, 2025

• synapse-web-monorepo

  Public
  Monorepo for Synapse Web projects

  TypeScript

  •24•5•3•31•Updated Feb 7, 2025Feb 7, 2025

• sage-monorepo

  Public
  Where OpenChallenges, Agora, and other Sage open source apps are built

  angularopenapimonorepo+ 10full-stackfairdeveloper-experiencenxagoraspecification-firstsage-bionetworks+ 3

  TypeScript

  •

  Apache License 2.0

  •12•23•150•4•Updated Feb 7, 2025Feb 7, 2025

• Sage-Governance-Documents

  Public
  Repository of Governance documents for systems like Synapse

  Apache License 2.0

  •1•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• AD-git-demo

  Public
  A project for AD DCC team github demonstration

  0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• schematic

  Public
  Package for biomedical data model and metadata ingress management

  schemabiomedical-informaticsdata-ingress

  Python

  •

  MIT License

  •26•22•0•4•Updated Feb 6, 2025Feb 6, 2025

• streamlit-snowflake-template

  Public template
  Python

  •

  Apache License 2.0

  •2•2•0•0•Updated Feb 6, 2025Feb 6, 2025

• Genie

  Public
  Validation and processing of GENIE files

  pythonetlgenie+ 2dpecomponc

  Python

  •

  MIT License

  •9•12•1•3•Updated Feb 6, 2025Feb 6, 2025

• GENIE-Sponsored-Projects

  Public
  This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files

  genie

  Python

  •

  MIT License

  •1•5•5•1•Updated Feb 6, 2025Feb 6, 2025

• genie-bpc-pipeline

  Public
  GENIE BPC pipeline scripts

  genie

  R

  •

  MIT License

  •1•3•0•3•Updated Feb 5, 2025Feb 5, 2025

• genie-bpc-brca-landscape-manu

  Public
  Landscape manuscript analyses for the GENIE BPC cohort of Breast cancer

  R

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• Synapse-Repository-Services

  Public
  The Synapse Repository Services project is the home of the JSON REST web services for Synapse.

  Java

  •

  Apache License 2.0

  •54•38•0•6•Updated Feb 4, 2025Feb 4, 2025

• synapsePythonClient

  Public
  Programmatic interface to Synapse services for Python

  synapsepython

  Python

  •

  Apache License 2.0

  •69•70•5•3•Updated Feb 4, 2025Feb 4, 2025

• agora-data-manager

  Public
  Tool to manage agora data

  Shell

  •

  Apache License 2.0

  •10•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• Synapse-Stack-Builder

  Public
  Project for building a complete Synapse Stack

  Java

  •

  Apache License 2.0

  •20•5•0•1•Updated Feb 1, 2025Feb 1, 2025

• Synapse-ETL-Jobs

  Public
  Synapse ETL jobs project will be maintaining all the ETL jobs for Synapse

  Python

  •5•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• data_curator_config

  Public
  Project configurations for the Data Curator App

  21•2•0•0•Updated Jan 30, 2025Jan 30, 2025

• core-models

  Public
  Sage repository for data models and core models work

  Python

  •1•1•3•0•Updated Jan 30, 2025Jan 30, 2025

• shiny-base

  Public
  Base Docker image for Shiny applications

  Dockerfile

  •1•0•0•1•Updated Jan 30, 2025Jan 30, 2025

• genie-bpc-bladder-landscape-manu

  Public
  Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.

  R

  •0•1•0•0•Updated Jan 29, 2025Jan 29, 2025

• genie-bpc-quac-wrapper

  Public
  Wrapper for the GENIE BPC Quality Assurance Checklist for monitoring and notifications

  genie

  R

  •

  MIT License

  •1•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• scicomp-provisioner

  Public
  An service to auto provision resources

  Jinja

  •

  Apache License 2.0

  •45•1•0•0•Updated Jan 27, 2025Jan 27, 2025

• aws-infra

  Public
  Global Sage Bionetworks AWS Infrastructure

  scipool

  Jinja

  •

  Apache License 2.0

  •14•8•0•0•Updated Jan 22, 2025Jan 22, 2025

• s3-synapse-sync

  Public
  Python

  •

  Apache License 2.0

  •7•4•3•0•Updated Jan 17, 2025Jan 17, 2025

• iAtlas-infra

  Public
  Shell

  •

  Apache License 2.0

  •5•2•0•0•Updated Jan 14, 2025Jan 14, 2025

• data_curator-infra

  Public
  CDK-based template for deploying a containerized application to AWS

  Python

  •6•1•0•0•Updated Jan 9, 2025Jan 9, 2025

• data_curator

  Public
  Data and metadata ingress app

  R

  •

  Apache License 2.0

  •20•10•49•0•Updated Jan 9, 2025Jan 9, 2025

• challengeutils

  Public
  Synapse challenge utility functions

  pythonbenchmarkingchallenge+ 2synapsedream

  Python

  •

  Apache License 2.0

  •10•4•0•0•Updated Jan 7, 2025Jan 7, 2025