Repositories list

• hra-construction-usage-supporting-information

  Public
  Supporting information page for the "Human BioMolecular Atlas Program (HuBMAP): 3D Reference Atlas Construction and Usage" paper

  human-reference-atlassupporting-information

  Jupyter Notebook

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• upptime

  Public
  CNS Services Uptime Monitor

  Markdown

  •

  MIT License

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• hra-cell-type-populations-supporting-information

  Public
  Supporting information page for the HRApop paper

  human-reference-atlassupporting-information

  HTML

  •1•0•9•0•Updated Jan 30, 2025Jan 30, 2025

• hra-ftu-explorer-supporting-information

  Public
  Supporting information page for the FTU Explorer paper (in progress)

  human-reference-atlassupporting-information

  Jupyter Notebook

  •0•0•3•0•Updated Jan 30, 2025Jan 30, 2025

• hra-kg-supporting-information

  Public
  Supporting Information for “Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data”

  Jupyter Notebook

  •0•0•3•0•Updated Jan 30, 2025Jan 30, 2025

• scimaps

  Public
  SciMaps website

  TypeScript

  •0•2•10•0•Updated Jan 29, 2025Jan 29, 2025

• onto-llm-mapping

  Public
  [WIP] ontology mapping using LLMs and RAG

  Shell

  •

  MIT License

  •0•4•1•0•Updated Jan 28, 2025Jan 28, 2025

• hra-ftu-vccf-supporting-information

  Public
  Supporting information page for the "Function Tissue Units in the Human Reference Atlas" paper

  human-reference-atlassupporting-information

  Jupyter Notebook

  •1•1•0•0•Updated Jan 24, 2025Jan 24, 2025

• hra-organ-gallery-supporting-information

  Public
  Supporting Information for "Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas"

  human-reference-atlassupporting-information

  0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• katy

  Public
  Dr. Katy Borner's Profile Page

  HTML

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• hra-queries

  Public
  A repository for one-off API queries and similar coding experiments with HRA data

  Jupyter Notebook

  •0•0•0•0•Updated Jan 19, 2025Jan 19, 2025

• xmacroscope

  Public
  The xMacroscope provides a way for museum visitors to build and interpret visualizations that use data generated by the visitors during their exhibit experience.

  reactvisualizationgraphql+ 6angulartypescriptapollomapboxmuseumsmusetech

  TypeScript

  •

  MIT License

  •3•4•78•3•Updated Jan 7, 2025Jan 7, 2025

• trusted-ai

  Public
  Trusted AI

  TypeScript

  •

  MIT License

  •0•0•53•0•Updated Jan 7, 2025Jan 7, 2025

• spoke-vis

  Public
  SPOKE Visualization

  TypeScript

  •

  MIT License

  •0•0•7•1•Updated Jan 7, 2025Jan 7, 2025

• map4sci

  Public
  Implementation of a graph algorithm that uses a multi level tree based approach for interactive graph visualization with semantic zoom (ZMLT).

  C++

  •

  MIT License

  •0•3•14•2•Updated Jan 7, 2025Jan 7, 2025

• make-a-vis

  Public
  MaV: An online tool for creating visualizations

  TypeScript

  •

  MIT License

  •0•7•75•1•Updated Jan 7, 2025Jan 7, 2025

• hra-3d-cell-generation-api

  Public
  API to generate 3D Cells inside Anatomical Structures

  human-reference-atlas

  C++

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• hra-glb-preprocessor

  Public
  Make meshes manifold and filling holes. Generate OFF file for a single mesh from GLB

  Python

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• hra-node-dist-vis

  Public
  HRA Node Distance Visualization Web Component

  human-reference-atlas

  JavaScript

  •

  MIT License

  •0•2•0•0•Updated Dec 16, 2024Dec 16, 2024

• hra-amap

  Public
  HRA-AMAP: Bidirectional Projections Between Human Atlas Systems for Data and Code Interoperability

  human-reference-atlas

  Jupyter Notebook

  •

  MIT License

  •0•0•4•0•Updated Dec 13, 2024Dec 13, 2024

• hra-mouse-registrations

  Public
  Blender files and models for 5x5 mouse registrations

  human-reference-atlas

  1•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• hra-scrollytelling

  Public
  Learn about the HRA through scrollytelling!

  human-reference-atlas

  HTML

  •

  MIT License

  •0•2•0•0•Updated Dec 6, 2024Dec 6, 2024

• hra-organ-gallery-in-vr

  Public
  HRA Organ Gallery in VR

  Jupyter Notebook

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• macroscope-kiosk

  Public
  The Macroscope Kiosk is an application to access macroscopes from the Places & Spaces: Mapping Science exhibit

  TypeScript

  •

  MIT License

  •1•0•5•4•Updated Oct 28, 2024Oct 28, 2024

• a2agc-dataset

  Public
  Advanced Analytics for IU’s Addictions Grand Challenge (A2AGC)

  TypeScript

  •

  MIT License

  •1•0•0•12•Updated Sep 21, 2024Sep 21, 2024

• hra-lymphatics-3d-do

  Public
  A repo to hold data and code for testing the HRA 3D Digital Object for the axillary lymph nodes

  0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• hra-scrolly-3d-assets

  Public
  A repository to hold work for scrollytelling with 3D models

  0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

• hra-sennet-hoa-kaggle-2024

  Public
  Code for "Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys"

  machine-learningcomputer-visiondeep-learning+ 3kaggle-competitionpublication-codevasculature

  Jupyter Notebook

  •

  MIT License

  •2•1•1•0•Updated Aug 27, 2024Aug 27, 2024

• hra-juelich

  Public
  MIT License

  •0•0•3•0•Updated Aug 22, 2024Aug 22, 2024

• hra-ct-heterogeneity

  Public
  A repository for summer work on cell type heterogeneity

  Jupyter Notebook

  •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024