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    84 repositories

    • ARCTokenization

      Public
      Definition of controlled vocabulary tokens and library to tokenize ARC metadata into these tokens
      F#
      •
      MIT License
      •2•4•12•5•Updated Feb 7, 2025Feb 7, 2025

    • nfdi4plants.github.io

      Public
      DataPLANT static website using Fornax
      Astro
      •
      MIT License
      •16•4•1•0•Updated Feb 7, 2025Feb 7, 2025

    • arc-validate

      Public
      Home of all the tools and libraries to create and run validation of ARCs
      dockerunit-testingvalidationexpectofsharpdotnetarcnfdi4plantsdataplantisa-dotnet
      F#
      •
      MIT License
      •2•4•17•8•Updated Feb 6, 2025Feb 6, 2025

    • training-material

      Public
      Training material of DataPLANT workshops and classes
      HTML
      •
      Creative Commons Attribution 4.0 International
      •2•0•1•1•Updated Feb 6, 2025Feb 6, 2025

    • Swate

      Public
      Excel Add-In for annotation of experimental data and computational workflows.
      educationbiologyontologyisaresearch-data-managementrdmminimal-information
      F#
      •
      MIT License
      •7•32•24•1•Updated Feb 6, 2025Feb 6, 2025

    • ARCtrl

      Public
      Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.
      fsharpisaarccwlrdmfair-datafable-librariesro-crate
      F#
      •
      MIT License
      •8•17•40•5•Updated Feb 6, 2025Feb 6, 2025

    • nfdi4plants.knowledgebase

      Public
      This is the source repo for the nfdi4plants knowledge base webpage.
      slidestutorialsfaqhow-toknowledge-baseguides
      MDX
      •
      Creative Commons Attribution 4.0 International
      •32•4•5•0•Updated Feb 6, 2025Feb 6, 2025

    • DataHUB

      Public
      This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.
      Shell
      •
      MIT License
      •3•3•21•0•Updated Feb 5, 2025Feb 5, 2025

    • Swate-templates

      Public
      A collection of templates for Swate (https://github.com/nfdi4plants/Swate).
      F#
      •18•4•7•1•Updated Feb 5, 2025Feb 5, 2025

    • arc-to-invenio

      Public
      Automatic building of a Docker container for converting ARCs to Invenio Metadata
      F#
      •
      MIT License
      •0•2•8•2•Updated Feb 4, 2025Feb 4, 2025

    • arc-cwl-ro-crate-profile

      Public
      MIT License
      •0•0•8•1•Updated Feb 4, 2025Feb 4, 2025

    • arc-export

      Public
      Automatic building of a Docker container for exporting ARCs to the ARC.json
      F#
      •
      MIT License
      •0•3•1•3•Updated Feb 4, 2025Feb 4, 2025

    • elab2arc

      Public
      A prototype to convert eLabFTW experiments to ARC assays
      HTML
      •2•0•3•0•Updated Feb 3, 2025Feb 3, 2025

    • dataplant-keycloak-theme

      Public
      The official DataPLANT keycloak theme
      JavaScript
      •
      GNU Affero General Public License v3.0
      •0•1•2•0•Updated Jan 24, 2025Jan 24, 2025

    • ena2swate

      Public
      Generate SWATE template from ENA checklists
      CSS
      •1•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • arc-validation-packages

      Public
      ARC validation packages for https://avpr.nfdi4plants.org maintained by DataPLANT
      F#
      •
      MIT License
      •0•2•2•1•Updated Jan 14, 2025Jan 14, 2025

    • arcmanager_frontend

      Public
      Web-based application for creating and managing your ARCs directly on the DataHUB.
      Vue
      •
      GNU Affero General Public License v3.0
      •0•0•1•0•Updated Jan 14, 2025Jan 14, 2025

    • arcmanager_backend

      Public
      FastAPI backend for the ARCmanager.
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • dataplan

      Public
      DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT
      documentgeneration
      JavaScript
      •
      GNU General Public License v3.0
      •10•7•19•0•Updated Jan 7, 2025Jan 7, 2025

    • arc-rdm.org

      Public
      The official ARC website!
      Astro
      •2•2•4•0•Updated Dec 23, 2024Dec 23, 2024

    • ARCtrl.Querymodel

      Public
      This library contains reader functions to interact with the different formats present in an ARC
      F#
      •
      MIT License
      •1•5•3•0•Updated Dec 20, 2024Dec 20, 2024

    • ARCitect

      Public
      Cross-platform app to create and manage ARCs.
      Vue
      •7•9•30•1•Updated Dec 20, 2024Dec 20, 2024

    • Branding

      Public
      logos, colorschemes, etc. of DataPLANT and associated applications
      SCSS
      •
      MIT License
      •2•4•0•0•Updated Dec 19, 2024Dec 19, 2024

    • isa-ro-crate-profile

      Public
      MIT License
      •0•4•6•1•Updated Dec 19, 2024Dec 19, 2024

    • arc-validate-package-registry

      Public
      A repository of validation packages for ARCs
      F#
      •
      MIT License
      •4•3•21•0•Updated Dec 12, 2024Dec 12, 2024

    • resilientDataHUB

      Public
      Jinja
      •
      GNU Affero General Public License v3.0
      •0•0•0•3•Updated Dec 12, 2024Dec 12, 2024

    • BOAT-Builder-for-Ontology-ARC-Tables

      Public
      This tool/website is for a user friendly creating of an ARC template (essay or study) out of your free text protocols with self-annotated ontology labeled terms. These templates can be used in your ARC afterwards.
      F#
      •0•2•7•0•Updated Dec 11, 2024Dec 11, 2024

    • nfdi4plants_ontology

      Public
      An intermediate ontology for plants used by DataPLANT to fill the ontology gap
      ontologybrokernfdi4plantsdataplantdbpo
      F#
      •
      MIT License
      •10•7•3•0•Updated Dec 7, 2024Dec 7, 2024

    • dataplant-errorpages

      Public
      HTML
      •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • archigator-backend

      Public
      Archigator, a publicaton tool from Gitlab to Invenio
      Python
      •
      GNU Affero General Public License v3.0
      •0•1•2•0•Updated Dec 3, 2024Dec 3, 2024