Repositories list

• pIon

  Public
  Python

  •

  GNU General Public License v3.0

  •0•4•1•0•Updated Mar 14, 2025Mar 14, 2025

• pLink3

  Public
  A search engine for the identification of cross-linked protein complexes or proteomes from mass spectrometry data.

  0•6•12•0•Updated Mar 5, 2025Mar 5, 2025

• pGlyco3

  Public
  GDB

  •

  Apache License 2.0

  •4•17•24•0•Updated Feb 14, 2025Feb 14, 2025

• pFind3

  Public
  bioinformaticsproteomicsmass-spectrometry+ 1peptide-identification

  7•26•61•0•Updated Jan 26, 2025Jan 26, 2025

• pLink2

  Public
  pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.

  bioinformaticsproteomicsmass-spectrometry+ 1cross-linking

  C++

  •1•23•29•0•Updated Jan 11, 2025Jan 11, 2025

• pChem

  Public
  A modification-centric assessment tool for performance of chemoproteomic probes

  Python

  •

  Apache License 2.0

  •0•5•0•0•Updated Jun 5, 2022Jun 5, 2022

• pDeepXL

  Public
  pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning

  Python

  •

  GNU General Public License v3.0

  •1•9•3•0•Updated Feb 8, 2021Feb 8, 2021

• pDeep3

  Public
  MS/MS prediction for peptides

  Python

  •

  Other

  •5•22•1•0•Updated Dec 18, 2020Dec 18, 2020

• pGlyco2

  Public
  pGlyco is a software tool dedicated for the analysis of intact glycopeptides/glycoproteins using mass spectrometry.

  bioinformaticsproteomicsmass-spectrometry+ 1glycoproteomics

  Python

  •3•7•22•0•Updated Apr 28, 2020Apr 28, 2020

• pDeep

  Public
  pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning

  deep-learningproteomicsmass-spectrometry

  Python

  •

  Other

  •27•35•1•0•Updated Aug 22, 2019Aug 22, 2019

• pNovo

  Public
  0•1•0•0•Updated Jan 3, 2018Jan 3, 2018