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Multispecies analysis of joint site frequency spectra with PTA

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ptaPIRE

Multispecies analysis of joint site frequency spectra (jSFS) with PTA.

This repo will contain functions for simulating 2D jSFS data (two temporal samples) from populations undergoing recent and ancestral changes in population size, as well as specialized functions for estimating parameters for hierarchical models of size change across species within a community.

Some notes on methods here

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Multispecies analysis of joint site frequency spectra with PTA

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