init

.github/workflows/build.yaml

@@ -0,0 +1,43 @@
+name: Build and Test NPM packages
+on:
+  pull_request:
+    types: [opened, reopened, synchronize]
+    branches:
+      - 'main'
+  push:
+    branches:
+      - 'main'
+  workflow_dispatch: {}
+
+jobs:
+  init:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: milaboratory/github-ci/actions/context/init@v4
+        with:
+          version-canonize: false
+          branch-versioning: main
+  run:
+    needs:
+      - init
+
+    uses: milaboratory/github-ci-internal/.github/workflows/node-docker-simple-fast-pnpm.yaml@v4
+    with:
+      app-name: Block Boilerplate
+      app-name-slug: 'block-boilerplate'
+      notify-telegram: true
+
+      node-version: '20.x'
+      always-auth: 'true'
+
+      build-script-name: 'build'
+
+      test: true
+      test-script-name: 'test'
+
+    secrets:
+      env: |
+        { "PL_LICENSE": ${{ toJSON(secrets.MI_LICENSE) }}, "MI_LICENSE": ${{ toJSON(secrets.MI_LICENSE) }} }
+
+      TELEGRAM_NOTIFICATION_TARGET: ${{ secrets.TG_CHANNEL_MIBUILDS }}
+      TELEGRAM_API_TOKEN: ${{ secrets.TG_CI_BOT_TOKEN }}

.gitignore

@@ -0,0 +1,6 @@
+node_modules/
+dist/
+block-pack/
+dev/
+work/
+.test_auth.json

.prettierrc

@@ -0,0 +1,7 @@
+{
+  "semi": true,
+  "tabWidth": 2,
+  "trailingComma": "none",
+  "singleQuote": true,
+  "printWidth": 100
+}

.vscode/settings.json

@@ -0,0 +1,30 @@
+{
+    "files.exclude": {
+        "**/.npmrc": true,
+        "**/*.tgz": true,
+        "**/block-pack": true,
+        "**/dist": true,
+        "**/index.d.ts": true,
+        "**/index.js": true,
+        "**/node_modules": true,
+        "**/pnpm-lock.yaml": true,
+        "**/tsconfig.app.json": true,
+        "**/tsconfig.json": true,
+        "**/tsconfig.node.json": true,
+        "**/vite.config.mts": true,
+        "**/vite.config.ts": true,
+        "**/workflow/dev": true
+    },
+    "vitest.disableWorkspaceWarning": true,
+    "prettier.singleAttributePerLine": true,
+    "vue.format.wrapAttributes": "force-expand-multiline",
+    "editor.defaultFormatter": "esbenp.prettier-vscode",
+    "[vue]": {
+        "editor.defaultFormatter": "esbenp.prettier-vscode"
+    },
+    "cSpell.words": [
+        "datasource",
+        "pframe",
+        "prerun",
+    ]
+}

CHANGELOG.md

@@ -0,0 +1,3 @@
+## 1.0.0
+
+Initial release.

docs/description.md

@@ -0,0 +1,4 @@
+# Overview
+
+Long block description goes here.
+

model/package.json

@@ -0,0 +1,36 @@
+{
+  "name": "@pl-open/milaboratories.blast.model",
+  "version": "1.0.0",
+  "description": "Block model",
+  "type": "module",
+  "main": "dist/index.cjs",
+  "module": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "scripts": {
+    "build": "tsup && vite build && block-tools build-model"
+  },
+  "dependencies": {
+    "@platforma-sdk/model": "catalog:"
+  },
+  "devDependencies": {
+    "@platforma-sdk/block-tools": "catalog:",
+    "typescript": "catalog:",
+    "vite": "catalog:",
+    "tsup": "catalog:"
+  },
+  "tsup": {
+    "entry": [
+      "src/index.ts"
+    ],
+    "splitting": false,
+    "treeshake": true,
+    "clean": true,
+    "format": [
+      "cjs",
+      "esm"
+    ],
+    "dts": true,
+    "minify": false,
+    "sourcemap": true
+  }
+}

model/src/index.ts

@@ -0,0 +1,34 @@
+import { BlockModel, ImportFileHandle, InferOutputsType, Ref } from '@platforma-sdk/model';
+
+export type BlockArgs = {
+  dbRef?: Ref;
+
+  sequeces?: string;
+
+  fastaFile?: ImportFileHandle;
+};
+
+export const model = BlockModel.create<BlockArgs>('Heavy')
+
+  .initialArgs({})
+
+  .output('dbOptions', (ctx) => {
+    const specs = ctx.resultPool.getSpecsFromResultPool();
+
+    return specs.entries
+      .filter((spec) => {
+        return spec.obj.kind === 'fileSet' && spec.obj.annotations?.['pl7.app/type'] === 'blastDB';
+      })
+      .map((spec) => {
+        return {
+          text: spec.obj.annotations?.['pl7.app/label'] ?? 'Unlabelled',
+          value: spec.ref
+        };
+      });
+  })
+
+  .sections([{ type: 'link', href: '/', label: 'Main' }])
+
+  .done();
+
+export type BlockOutputs = InferOutputsType<typeof model>;

model/tsconfig.json

@@ -0,0 +1,16 @@
+{
+  "compilerOptions": {
+    "target": "es2022",
+    "module": "commonjs",
+    "moduleResolution": "node",
+    "esModuleInterop": true,
+    "strict": true,
+    "outDir": "./dist",
+    "rootDir": "./src",
+    "sourceMap": true,
+    "declaration": true
+  },
+  "types": [],
+  "include": ["src/**/*"],
+  "exclude": ["node_modules", "dist"]
+}

model/vite.config.mts

@@ -0,0 +1,20 @@
+import { defineConfig } from 'vite';
+
+export default defineConfig({
+  build: {
+    emptyOutDir: false,
+    lib: {
+      entry: 'src/index.ts',
+      name: 'model',
+      fileName: (format) => `my-lib.${format}.js`
+    },
+    minify: false,
+    sourcemap: true,
+    rollupOptions: {
+      output: {
+        format: 'iife',
+        entryFileNames: 'bundle.js'
+      }
+    }
+  }
+});

package.json

@@ -0,0 +1,46 @@
+{
+  "name": "@pl-open/milaboratories.blast",
+  "version": "1.0.0",
+  "scripts": {
+    "pretty": "prettier --write \"./**/*.{js,jsx,mjs,cjs,ts,tsx,json,vue}\"",
+    "build": "rm -rf ./block-pack && block-tools pack",
+    "build:model": "cd model && pnpm run build",
+    "build:all": "pnpm -r run build"
+  },
+  "files": [
+    "index.d.ts",
+    "index.js"
+  ],
+  "dependencies": {
+    "@pl-open/milaboratories.blast.workflow": "workspace:*",
+    "@pl-open/milaboratories.blast.model": "workspace:*",
+    "@pl-open/milaboratories.blast.ui": "workspace:*"
+  },
+  "block": {
+    "components": {
+      "workflow": "@pl-open/milaboratories.blast.workflow/dist/tengo/tpl/main.plj.gz",
+      "model": "@pl-open/milaboratories.blast.model/dist/model.json",
+      "ui": "@pl-open/milaboratories.blast.ui/dist"
+    },
+    "meta": {
+      "title": "BLAST",
+      "logo": "file:logos/block-logo.png",
+      "url": "https://github.com/milaboratory/platforma-block-boilerplate",
+      "docs": "https://github.com/milaboratory/platforma-block-boilerplate/docs",
+      "support": "mailto:support@milaboratories.com",
+      "description": "Basic Local Alignment Search Tool",
+      "longDescription": "file:./docs/description.md",
+      "changelog": "file:CHANGELOG.md",
+      "tags": ["blast"],
+      "organization": {
+        "name": "MiLaboratories Inc",
+        "url": "https://milaboratories.com/",
+        "logo": "file:logos/milaboratories.png"
+      }
+    }
+  },
+  "devDependencies": {
+    "@changesets/cli": "catalog:",
+    "@platforma-sdk/block-tools": "catalog:"
+  }
+}