Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feat: Improve numeric stability rolling_{std, var, cov, corr} #21528

Merged
merged 2 commits into from
Feb 28, 2025
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
162 changes: 51 additions & 111 deletions crates/polars-compute/src/rolling/no_nulls/variance.rs
Original file line number Diff line number Diff line change
@@ -1,138 +1,88 @@
use num_traits::{FromPrimitive, ToPrimitive};
use polars_error::polars_ensure;

use super::*;
use crate::var_cov::VarState;

pub(super) struct SumSquaredWindow<'a, T> {
pub struct VarWindow<'a, T> {
slice: &'a [T],
sum_of_squares: T,
var: VarState,
ddof: u8,
last_start: usize,
last_end: usize,
// if we don't recompute every 'n' iterations
// we get a accumulated error/drift
last_recompute: u8,
}

impl<'a, T: NativeType + IsFloat + std::iter::Sum + AddAssign + SubAssign + Mul<Output = T>>
RollingAggWindowNoNulls<'a, T> for SumSquaredWindow<'a, T>
impl<T: ToPrimitive + Copy> VarWindow<'_, T> {
fn compute_var(&mut self, start: usize, end: usize) {
self.var = VarState::default();
for value in &self.slice[start..end] {
let value: f64 = NumCast::from(*value).unwrap();
self.var.insert_one(value);
}
}
}

impl<'a, T: NativeType + IsFloat + Float + ToPrimitive + FromPrimitive>
RollingAggWindowNoNulls<'a, T> for VarWindow<'a, T>
{
fn new(slice: &'a [T], start: usize, end: usize, _params: Option<RollingFnParams>) -> Self {
let sum = slice[start..end].iter().map(|v| *v * *v).sum::<T>();
Self {
fn new(slice: &'a [T], start: usize, end: usize, params: Option<RollingFnParams>) -> Self {
let mut out = Self {
slice,
sum_of_squares: sum,
var: VarState::default(),
last_start: start,
last_end: end,
last_recompute: 0,
}
ddof: match params {
None => 1,
Some(pars) => {
let RollingFnParams::Var(pars) = pars else {
unreachable!("expected Var params");
};
pars.ddof
},
},
};
out.compute_var(start, end);
out
}

unsafe fn update(&mut self, start: usize, end: usize) -> Option<T> {
// if we exceed the end, we have a completely new window
// so we recompute
let recompute_sum = if start >= self.last_end || self.last_recompute > 128 {
self.last_recompute = 0;
let recompute_var = if start >= self.last_end {
true
} else {
self.last_recompute += 1;
// remove elements that should leave the window
let mut recompute_sum = false;
let mut recompute_var = false;
for idx in self.last_start..start {
// SAFETY:
// we are in bounds
let leaving_value = self.slice.get_unchecked(idx);
// SAFETY: we are in bounds
let leaving_value = *self.slice.get_unchecked(idx);

// if the leaving value is nan we need to recompute the window
if T::is_float() && !leaving_value.is_finite() {
recompute_sum = true;
recompute_var = true;
break;
}

self.sum_of_squares -= *leaving_value * *leaving_value;
let leaving_value: f64 = NumCast::from(leaving_value).unwrap();
self.var.remove_one(leaving_value);
}
recompute_sum
recompute_var
};

self.last_start = start;

// we traverse all values and compute
if T::is_float() && recompute_sum {
self.sum_of_squares = self
.slice
.get_unchecked(start..end)
.iter()
.map(|v| *v * *v)
.sum::<T>();
if recompute_var {
self.compute_var(start, end);
} else {
for idx in self.last_end..end {
let entering_value = *self.slice.get_unchecked(idx);
self.sum_of_squares += entering_value * entering_value;
}
}
self.last_end = end;
Some(self.sum_of_squares)
}
}

// E[(xi - E[x])^2]
// can be expanded to
// E[x^2] - E[x]^2
pub struct VarWindow<'a, T> {
mean: MeanWindow<'a, T>,
sum_of_squares: SumSquaredWindow<'a, T>,
ddof: u8,
}
let entering_value: f64 = NumCast::from(entering_value).unwrap();

impl<
'a,
T: NativeType
+ IsFloat
+ Float
+ std::iter::Sum
+ AddAssign
+ SubAssign
+ Div<Output = T>
+ NumCast
+ One
+ Zero
+ PartialOrd
+ Sub<Output = T>,
> RollingAggWindowNoNulls<'a, T> for VarWindow<'a, T>
{
fn new(slice: &'a [T], start: usize, end: usize, params: Option<RollingFnParams>) -> Self {
Self {
mean: MeanWindow::new(slice, start, end, None),
sum_of_squares: SumSquaredWindow::new(slice, start, end, None),
ddof: match params {
None => 1,
Some(pars) => {
let RollingFnParams::Var(pars) = pars else {
unreachable!("expected Var params");
};
pars.ddof
},
},
}
}

unsafe fn update(&mut self, start: usize, end: usize) -> Option<T> {
let count: T = NumCast::from(end - start).unwrap();
let sum_of_squares = self.sum_of_squares.update(start, end).unwrap_unchecked();
let mean = self.mean.update(start, end).unwrap_unchecked();

let denom = count - NumCast::from(self.ddof).unwrap();
if denom <= T::zero() {
None
} else if end - start == 1 {
Some(T::zero())
} else {
let out = (sum_of_squares - count * mean * mean) / denom;
// variance cannot be negative.
// if it is negative it is due to numeric instability
if out < T::zero() {
Some(T::zero())
} else {
Some(out)
self.var.insert_one(entering_value);
}
}
self.last_end = end;
self.var
.finalize(self.ddof)
.map(|v| T::from_f64(v).unwrap())
}
}

Expand All @@ -145,17 +95,7 @@ pub fn rolling_var<T>(
params: Option<RollingFnParams>,
) -> PolarsResult<ArrayRef>
where
T: NativeType
+ Float
+ IsFloat
+ std::iter::Sum
+ AddAssign
+ SubAssign
+ Div<Output = T>
+ NumCast
+ One
+ Zero
+ Sub<Output = T>,
T: NativeType + Float + IsFloat + ToPrimitive + FromPrimitive + AddAssign,
{
let offset_fn = match center {
true => det_offsets_center,
Expand Down Expand Up @@ -231,7 +171,7 @@ mod test {
&[
None,
None,
Some(52.333333333333336),
Some(52.33333333333333),
Some(f64::nan()),
Some(f64::nan()),
Some(f64::nan()),
Expand Down
Loading