v5.5.0 chokladboll

What's Changed

• Support biopython 1.85 and drop python 3.8 by @manulera in #340
• New release for Python 3.13 and Biopython 1.85, dropping support for Python 3.9 by @BjornFJohansson in #345

Full Changelog: v5.4.0...v5.5.0

Semla

Pydna is currently only compatible with Biopython <= 1.84.

v5.3.0 risboll

What's Changed

• Bump pyqt5 from 5.15.8 to 5.15.9 by @dependabot in #96
• Bump biopython from 1.80 to 1.81 by @dependabot in #95
• Bump ipython from 8.9.0 to 8.10.0 by @dependabot in #94
• Bump coverage from 7.2.1 to 7.2.2 by @dependabot in #106
• test_module_all.py needs pyparsing by @louisabraham in #115
• allow tests to run without error by @louisabraham in #116
• Bump tornado from 6.2 to 6.3.2 by @dependabot in #120
• Bump requests from 2.27.1 to 2.31.0 by @dependabot in #118
• Bump pytest from 7.3.1 to 7.4.0 by @dependabot in #129
• Bump requests-mock from 1.10.0 to 1.11.0 by @dependabot in #125
• Bump pillow from 9.5.0 to 10.0.0 by @dependabot in #130
• Bump matplotlib from 3.7.1 to 3.7.2 by @dependabot in #131
• Bump coverage from 7.2.7 to 7.3.0 by @dependabot in #134
• Bump pytest-doctestplus from 0.12.1 to 1.0.0 by @dependabot in #135
• Issue 147 by @manulera in #150
• closes #154 by @manulera in #155
• Bump matplotlib from 3.7.3 to 3.7.4 by @dependabot in #156
• Bump sphinx-rtd-theme from 1.3.0 to 2.0.0 by @dependabot in #164
• Issue 157 by @manulera in #163
• Issue 152 2 by @manulera in #177
• Cutsite pairs bugs by @manulera in #184
• Simpler cut representation by @manulera in #187
• Update shift_location for origin-wrapping feature with strand None by @manulera in #179
• Bump pytest from 7.4.4 to 8.0.0 by @dependabot in #189
• Bump coverage from 7.4.0 to 7.4.1 by @dependabot in #188
• Cutsite pairs rebased by @manulera in #199
• Fix lowercase protospacers not working by @dgruano in #217
• bump pydivsufsort, <0.0.14 not supported by M1 macs by @manulera in #214
• Release? by @manulera in #306
• fix icon link + 2 small bug fixes by @manulera in #320

Full Changelog: v5.2.0...v5.3.0

Bugfix

Bugfix PCR on circular template.
Allowing lowercase gRNA.

NEW SEGUID

test release.

v6.0.0a25

What's Changed

• Bump pyqt5 from 5.15.8 to 5.15.9 by @dependabot in #96
• Bump biopython from 1.80 to 1.81 by @dependabot in #95
• Bump ipython from 8.9.0 to 8.10.0 by @dependabot in #94
• Bump coverage from 7.2.1 to 7.2.2 by @dependabot in #106
• test_module_all.py needs pyparsing by @louisabraham in #115
• allow tests to run without error by @louisabraham in #116
• Bump tornado from 6.2 to 6.3.2 by @dependabot in #120
• Bump requests from 2.27.1 to 2.31.0 by @dependabot in #118
• Bump pytest from 7.3.1 to 7.4.0 by @dependabot in #129
• Bump requests-mock from 1.10.0 to 1.11.0 by @dependabot in #125
• Bump pillow from 9.5.0 to 10.0.0 by @dependabot in #130
• Bump matplotlib from 3.7.1 to 3.7.2 by @dependabot in #131
• Bump coverage from 7.2.7 to 7.3.0 by @dependabot in #134
• Bump pytest-doctestplus from 0.12.1 to 1.0.0 by @dependabot in #135
• Issue 147 by @manulera in #150
• closes #154 by @manulera in #155
• Bump matplotlib from 3.7.3 to 3.7.4 by @dependabot in #156

New Contributors

• @dependabot made their first contribution in #96
• @manulera made their first contribution in #150

Full Changelog: v5.2.0...v6.0.0a25

Kanelbulle release candidate 6.0.0a15

Bugfix. There was a subtle error in how the template sequence was chosen for the
pydna.design.circular_assembly_fragments in some situations. There were no tests for this
and there were also no effect on the final result.

What's Changed

• Issue 147 by @manulera in #150
• closes #154 by @manulera in #155

New Contributors

• @manulera made their first contribution in #150

Full Changelog: v6.0.0a4...v6.0.0a15

Kanelbulle 6.0.0a4

Full Changelog: v6.0.0a3...v6.0.0a4

6.0.0a3

What's Changed

• Bump pytest from 7.3.1 to 7.4.0 by @dependabot in #129
• Bump requests-mock from 1.10.0 to 1.11.0 by @dependabot in #125
• Bump pillow from 9.5.0 to 10.0.0 by @dependabot in #130
• Bump matplotlib from 3.7.1 to 3.7.2 by @dependabot in #131
• Bump coverage from 7.2.7 to 7.3.0 by @dependabot in #134
• Bump pytest-doctestplus from 0.12.1 to 1.0.0 by @dependabot in #135

Full Changelog: v6.0.0a02...v6.0.0a3

Kanelbulle

see 6.0.0a01

fixes the pydna.getenv() function on Windows as environment variables are uppercase.