Merge pull request #925 from pysam-developers/pysam-0.16-release-cand…

…idate

{AH} bump version to 0.16.0

doc/release.rst

@@ -2,6 +2,30 @@
 Release notes
 =============
 
+Release 0.16.0
+==============
+
+This release wraps htslib/bcftools version 1.10.2 and samtools version
+1.10. The following bugs reported against pysam are fixed due to this:
+
+* [#447] Writing out QNAME longer than 251 characters corrupts BAM
+* [#640, #734, #843] Setting VariantRecord pos or stop raises error
+* [#738, #919] FastxFile truncates concatenated plain gzip compressed files
+
+Additional bugfixes:
+
+* [#840] Pileup doesn't work on python3 when `index_filename` is used
+* [#886] FastqProxy raises ValueError when instantiated from python
+* [#904] VariantFile.fetch() throws ValueError on files with no records
+* [#909] Fix incorrect quoting in VariantFile contig records
+* [#915, #916] Implement pileup() for unindexed files and/or SAM files
+
+Backwards incompatible changes:
+
+* The `samtools import` command was removed in samtools 1.10, so pysam
+  no longer exports a `samimport` function. Use `pysam.view()` instead.
+
+
 Release 0.15.4
 ==============
 

pysam/version.py

@@ -1,5 +1,5 @@
 # pysam versioning information
-__version__ = "0.15.4"
+__version__ = "0.16.0"
 
 __samtools_version__ = "1.10"
 __bcftools_version__ = "1.10.2"